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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C006216P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 148aa MW: 16656.4 Da PI: 8.9277 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42 | 1.6e-13 | 34 | 124 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS B3 5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 l++s+v +lvlp kf ++ ++ + +l +g++W++ + y +++g+ + +k W++Fv++n Lk+gD +vF+l + s +++v+ MELO3C006216P1 34 LSKSHVAPIYNLVLPAKFH-SIlpAIV--IP--AVL-LCRGKKWKIDY-YGNRRGKALDSKQWRKFVNDNCLKSGDACVFELLeCSsSILKFRVQ 121 5667777777788888886.4433222..22..333.348********.88888889999*********************65355577777777 PP EE- CS B3 96 vfr 98 ++r MELO3C006216P1 122 ILR 124 776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.2E-14 | 26 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-15 | 26 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.73 | 30 | 126 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.41E-15 | 33 | 124 | No hit | No description |
SMART | SM01019 | 4.3E-4 | 34 | 126 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-11 | 35 | 124 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MQSERNPPTE LPTIEPQNGE TMPLSGKPYH AFILSKSHVA PIYNLVLPAK FHSILPAIVI 60 PAVLLCRGKK WKIDYYGNRR GKALDSKQWR KFVNDNCLKS GDACVFELLE CSSSILKFRV 120 QILRGDIPLE LHDKFSGETK ETPIHLD* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 1e-173 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 1e-173 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011650806.1 | 1e-102 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A0A0L3V3 | 1e-100 | A0A0A0L3V3_CUCSA; Uncharacterized protein | ||||
STRING | XP_008345126.1 | 2e-42 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9722 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-08 | B3 family protein |