PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005941P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 157aa    MW: 17463.4 Da    PI: 9.5387
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005941P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.3e-1891142256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +++GVr+++ +g+++AeIrdps   k +r++lg++ ta++Aa a+++a+ +++g+
  MELO3C005941P1  91 QFRGVRRRP-WGKYAAEIRDPSR--KGARIWLGTYHTAQDAALAYDRAAFQMRGA 142
                     58*******.**********854..34*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.9E-3591155IPR001471AP2/ERF domain
PROSITE profilePS5103223.18291149IPR001471AP2/ERF domain
CDDcd000183.10E-2891150No hitNo description
Gene3DG3DSA:3.30.730.107.8E-3291150IPR001471AP2/ERF domain
PfamPF008479.4E-1392141IPR001471AP2/ERF domain
PRINTSPR003675.4E-1392103IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2292150IPR016177DNA-binding domain
PRINTSPR003675.4E-13131151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MLSSSSSSSS LEGSSSDLFL LEQIRRHLLE DDLGKGSTNN NVEDGIIRYD ISCSGAGWEM  60
SNNNNNNMVD QMSSIIIRDN PEEKSRPRGL QFRGVRRRPW GKYAAEIRDP SRKGARIWLG  120
TYHTAQDAAL AYDRAAFQMR GAKAKLNFPH IISSNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2988154268ATERF1
3gcc_A1e-2988154268ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134277.11e-91PREDICTED: ethylene-responsive transcription factor 1
TrEMBLA0A0A0L8933e-90A0A0A0L893_CUCSA; Uncharacterized protein
STRINGXP_008439350.11e-112(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-28ethylene-responsive element binding factor 13