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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C005928P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 379aa MW: 43401.4 Da PI: 5.8507 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.8 | 4e-13 | 157 | 208 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +++l+P++ + ++ + a+i A++++k+L+ MELO3C005928P2 157 QRMTHIAVERNRRRQMNDHLNVIKSLIPTS---YVQRGDQASIIGGAIDFVKELE 208 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.11E-16 | 147 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-13 | 155 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.30E-9 | 155 | 205 | No hit | No description |
PROSITE profile | PS50888 | 14.881 | 156 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-10 | 157 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-9 | 162 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MERLQGPINP CLYGEYSETG CSEQEFSNLG FEESEEVCLL TSSLEDKIPF LQMLQSVESQ 60 SFKEPNFQSL LKLQHLNKPW EEGVSKIQEL VELFSSPINS ETKDQNQPPN SDRVFSECNQ 120 NQGLSQTQMT KFPPVIKERR KRKRSKPTKN KEEVESQRMT HIAVERNRRR QMNDHLNVIK 180 SLIPTSYVQR GDQASIIGGA IDFVKELEQL LESLEALRKE RKGAEGECKD EQSEVRVASN 240 RRIGEGVCAE LRSEVAEIEV TMIQTHVNLK IRCRKRQGQL LKVIVALEDL RLTVLHLNIT 300 SQTAATMLYS FNLKIEDECK LESEEQIAAT VNQIFSFMNN GRLVNEAKGK FQAVQWQSLT 360 MEEDPPFPPL FPIRKKEK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 143 | RRKRKR |
2 | 139 | 146 | RKRKRSKP |
3 | 157 | 168 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008437748.1 | 0.0 | PREDICTED: transcription factor bHLH67 isoform X1 | ||||
TrEMBL | A0A1S3AVB5 | 0.0 | A0A1S3AVB5_CUCME; transcription factor bHLH67 isoform X1 | ||||
STRING | XP_008437748.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6894 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61950.1 | 1e-77 | bHLH family protein |