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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C005867P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 269aa MW: 29379.8 Da PI: 6.3009 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.2e-20 | 91 | 142 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+++GVr+++ +g+W+AeIrd g+r r +lg+++taeeAa ++ a++kl+g+ MELO3C005867P1 91 SKFRGVRRRP-WGKWAAEIRDT---GRRVRLWLGTYDTAEEAAMVYDSAALKLRGP 142 79********.**********3...346**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.25E-32 | 91 | 151 | No hit | No description |
SuperFamily | SSF54171 | 5.1E-22 | 91 | 150 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-14 | 91 | 141 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 92 | 150 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.762 | 92 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-37 | 92 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 93 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MEVSTILRRK PISEPPGNFH GRSSTGSRIV RISMTDPDAT DSSSSDEDTL NYPRRRVKRY 60 EIELSVGTAG DGGGCGARKR KRKRKAVGNV SKFRGVRRRP WGKWAAEIRD TGRRVRLWLG 120 TYDTAEEAAM VYDSAALKLR GPAALTNFPT HTPPPSTGDE PSSPTNISSP TSVLYRTQFT 180 ECSSSYRAVN DSPVVDCPFS DDIFKSSVLE SPLFPEYQST LITEAPWIDA DGGARSSDLV 240 AAAGSVEIVE DHDYFEEILM GSDPLVVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-20 | 91 | 149 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 84 | KRKRKRK |
2 | 79 | 84 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008437573.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF1-like | ||||
Swissprot | Q9SUE3 | 6e-42 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A1S3AUH0 | 0.0 | A0A1S3AUH0_CUCME; ethylene-responsive transcription factor CRF1-like | ||||
STRING | XP_008437573.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24498 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 3e-29 | cytokinin response factor 1 |
Publications ? help Back to Top | |||
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