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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C005808P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 23035.5 Da PI: 4.8857 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.7e-19 | 17 | 66 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +grWv+eI+d ++ r +lg+f+taeeAa+a++ a+++l+g MELO3C005808P1 17 RYVGVRQRP-SGRWVSEIKD----SlQKVRLWLGTFDTAEEAARAYDDAARALRG 66 79*******.7*********....4456*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.09E-20 | 17 | 75 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-29 | 17 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-13 | 17 | 66 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.39E-21 | 17 | 76 | No hit | No description |
PROSITE profile | PS51032 | 20.798 | 17 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-38 | 17 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-9 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-9 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MAMGSCRKKA SSRGHHRYVG VRQRPSGRWV SEIKDSLQKV RLWLGTFDTA EEAARAYDDA 60 ARALRGSNAR TNFEYLPPSS CDSGADAGDA NQPIESPFSF EEGCIEEDGL LGALKAKLFD 120 GKGQRVLQAV AQTTCCSTTD NLINTNNNSN YNETIIQGGI HPPPVLSSGQ VDVVTAELDS 180 GGGSGWFNAS STVGLHAWPV VLGGLEEGGN IGDVCVM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 15 | 73 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008437477.1 | 1e-161 | PREDICTED: ethylene-responsive transcription factor ERF096-like | ||||
TrEMBL | A0A1S3AUP5 | 1e-160 | A0A1S3AUP5_CUCME; ethylene-responsive transcription factor ERF096-like | ||||
STRING | XP_008437477.1 | 1e-161 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11333 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 6e-19 | related to AP2 11 |