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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C005747P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 302aa MW: 33135.3 Da PI: 8.6741 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.6e-18 | 104 | 153 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg+++++e Aa a++ a+ kl+ge MELO3C005747P1 104 YRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDSPETAAYAYDCAACKLRGE 153 9******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.33E-21 | 102 | 162 | No hit | No description |
SMART | SM00380 | 3.8E-35 | 103 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-30 | 103 | 161 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 103 | 160 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.8E-13 | 103 | 153 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.234 | 103 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-11 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-11 | 142 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MINTPNLQFG LTDVSTALSN LILTGGGNTL DSILSHSESL SSVTDSRDFQ PAAGSSVYLQ 60 QREVLQKFSQ DRKSNGSRDL FSRAYELLYS RSGAAVNGGE RKIYRGVRQR HWGKWVAEIR 120 LPQNRMRVWL GTYDSPETAA YAYDCAACKL RGEYARLNFP NLKDLKTDLS SGEFARLSEL 180 KKMVDAKIQA IFQKIRKGKG KKSVKKKDSQ RTGGDLGSIS GSCSSSSSSV SLPPAAAELT 240 EEWSWENVQP PATAEEGLWN FENSPKAVSM DCAMAGSETE CYSLAKMPSF DADLIWQVLA 300 N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-16 | 102 | 160 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008437387.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF061-like | ||||
TrEMBL | A0A1S3AU14 | 0.0 | A0A1S3AU14_CUCME; ethylene-responsive transcription factor ERF061-like | ||||
STRING | XP_008437387.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7181 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 4e-41 | ERF family protein |