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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
MELO3C005393P1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 161aa MW: 18781.7 Da PI: 10.2948 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MELO3C005393P1 | genome | MELONOMICS | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 98.5 | 2.7e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++ rqvtfskRrng+lKKA+ELSvLCdaev+viifs++g+lye+ss
MELO3C005393P1 9 KRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLYEFSS 59
79***********************************************96 PP
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| 2 | K-box | 51.6 | 4.1e-18 | 82 | 156 | 9 | 83 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83
+e +++l+qe++ k+ie+L+++q +llG +L+s+s++eL+++e+qL sl++iR++K +l+++q e+l +k
MELO3C005393P1 82 RSEGYMQQLKQEAEMTAKKIEQLEKSQQKLLGRGLDSCSFEELREIERQLVLSLTRIRETKAQLFKDQKEKLIEK 156
677789***************************************************************998665 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 6.4E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 32.562 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.0E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 8.50E-42 | 3 | 72 | No hit | No description |
| SuperFamily | SSF55455 | 1.83E-33 | 3 | 78 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 5.6E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.0E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.0E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 11.616 | 87 | 160 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 7.5E-17 | 88 | 156 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009838 | Biological Process | abscission |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0010150 | Biological Process | leaf senescence |
| GO:0080187 | Biological Process | floral organ senescence |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 161 aa
Download sequence Send
to blast |
MVRGKVEMKR IENSTSRQVT FSKRRNGLLK KAYELSVLCD AEVSVIIFSQ KGRLYEFSSS 60
DMQKTIERYR KHGKEGQSNP FRSEGYMQQL KQEAEMTAKK IEQLEKSQQK LLGRGLDSCS 120
FEELREIERQ LVLSLTRIRE TKAQLFKDQK EKLIEKIIVQ *
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 5e-21 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 5e-21 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 5e-21 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 5e-21 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 5f28_A | 5e-21 | 1 | 78 | 1 | 78 | MEF2C |
| 5f28_B | 5e-21 | 1 | 78 | 1 | 78 | MEF2C |
| 5f28_C | 5e-21 | 1 | 78 | 1 | 78 | MEF2C |
| 5f28_D | 5e-21 | 1 | 78 | 1 | 78 | MEF2C |
| 6c9l_A | 5e-21 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 5e-21 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 5e-21 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 5e-21 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 5e-21 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 5e-21 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
