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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C005358P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 256aa MW: 29610.1 Da PI: 10.2638 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 130.7 | 1.4e-40 | 87 | 227 | 2 | 127 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaesssssasnsssg.. 88 gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWLl +++ aik+l + + + ++s+++s+ n+++g MELO3C005358P1 87 RGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAyffkysN------SGQSSEVVSEINDNNGvv 175 68**************************************************************6665441......444444455444444455 PP TCP 89 .kaaksaakskksqksaasalnlak..esr..........akarararertr 127 aa+++ ++++q++ a + +++ +sr +ararar+rt MELO3C005358P1 176 nVAASNHLDQQQDQEDVAFTGGFKDkiKSRtlrtgsrearDRARARARQRTL 227 4222222233333333333333333233334444443322667777777664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.9E-40 | 88 | 229 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.487 | 89 | 147 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDDHQQQQHR ENQILINSYD DHDLHYFPHP FLDDDDLFLS HFLSQQQQFF EQRDQQLDET 60 TKKMKKKKKL CGSSSSRING SNSTKRRGKK DRHSKIYTAQ GPRDRRMRLS LQIARKFFDL 120 QDMLGFDKAS KTIEWLLLNS NSAIKDLKQA YFFKYSNSGQ SSEVVSEIND NNGVVNVAAS 180 NHLDQQQDQE DVAFTGGFKD KIKSRTLRTG SREARDRARA RARQRTLLKN TLLPNPPITS 240 SISQHFDHLS VLKLP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 214 | 224 | RDRARARARQR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011656248.1 | 1e-144 | PREDICTED: transcription factor TCP12 | ||||
TrEMBL | A0A0A0KRR2 | 1e-143 | A0A0A0KRR2_CUCSA; Uncharacterized protein | ||||
STRING | XP_008437699.1 | 1e-144 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-29 | TCP domain protein 12 |