PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005248P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 253aa    MW: 27316.3 Da    PI: 7.1282
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005248P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004690112123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  MELO3C005248P1  90 FSCNYCRRKFFSSQALGGHQNAH 112
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-688118No hitNo description
PROSITE profilePS5015711.30290117IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
METLNLNLEA AKDSEPSSSQ EANPDHSNTA TTTSSCSPSL SKVVVADTSP LSLDLTLQFN  60
SNDIDSKGDG EINGETSSNK SPSSTIPRVF SCNYCRRKFF SSQALGGHQN AHKRERTMAK  120
RVTRMGMFFD RYGSLASLPL HGSALRSLGI EAHGALHQTV VASDQRPYPG RSIGAKFEQS  180
SFGFPTFIED YDDDVGMFWP GSFRQVAAKV DSSLGPLKTP VQNSNPEFGK TMPPPRTGAT  240
SSPDLTLRLY NL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466973.10.0PREDICTED: zinc finger protein 7-like
RefseqXP_008466976.10.0PREDICTED: zinc finger protein 7-like
TrEMBLA0A1S3CTQ80.0A0A1S3CTQ8_CUCME; zinc finger protein 7-like
STRINGXP_008466973.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.18e-36zinc finger protein 4