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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C004928P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 517aa MW: 57845.3 Da PI: 7.0957 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.5 | 6.5e-08 | 394 | 442 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r +Rt ++k++w+++l MELO3C004928P2 394 SWTLSEVMKLVEGVSEYGVGRWTEIKRLQFassSHRTSVDLKDKWRNLL 442 5***********************9876558999*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.318 | 387 | 446 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 387 | 444 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.0E-15 | 389 | 452 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-9 | 391 | 444 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-6 | 394 | 442 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.21E-19 | 395 | 443 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MNAASKETMM TSNQATKMFT YEFPDVDSDL SIFPVPEDDV LGVEHFLEPD FNKCFSGSVL 60 DFNTFHSHKC LGIEHFSFAV DFDQIKIDSE SLHSSLTLEG ERTKQEGHDE KLRADDVCSG 120 INKHPGAVNC RTTDDIFNLA PASSNASFLG NVDFGSYSQG FSTTDIGVDL SFAGGHNVAF 180 DQKEGKHMIS SSTGSSGCSG STTACLDDEN MSDDRPMKRK RLSSSDSFKT NYEHNESKIN 240 PFNEGNRGDT LITEKRLRKP PRRYSEESVE QKSRSNSKKS ALKASKDKSL HSESHKQQWQ 300 KKVKAAPIIH KDKSFNGGCI QVPFGLPIEE GHSAKKRTCW EPEEIKDNRI LCIKDKYEVE 360 SFSAESEDEN TEDECTTKGN STQKGNSRRK HHISWTLSEV MKLVEGVSEY GVGRWTEIKR 420 LQFASSSHRT SVDLKDKWRN LLKASDTQLQ NRRKVVLGRK QASQQVPESV LCRVRELAAI 480 YPYPRENKSK ESCSAPSTSS FKSTTNNMFV SLPTVM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681928 | 0.0 | LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008462901.1 | 0.0 | PREDICTED: uncharacterized protein LOC103501169 isoform X1 | ||||
TrEMBL | A0A1S3CHY4 | 0.0 | A0A1S3CHY4_CUCME; uncharacterized protein LOC103501169 isoform X1 | ||||
STRING | XP_008462901.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15018 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 8e-29 | TRF-like 6 |