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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MELO3C004887P1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
HD-ZIP |
Protein Properties |
Length: 232aa MW: 25305.1 Da PI: 8.4878 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MELO3C004887P1 | genome | MELONOMICS | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 60.3 | 3.2e-19 | 24 | 81 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
++t+eq+e+Le++++++++ps +r++L + + +++ +q+kvWFqNrR +ek+
MELO3C004887P1 24 YVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCpilaNIEPKQIKVWFQNRRCREKQ 81
6789****************************************************97 PP
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2 | bZIP_1 | 20.1 | 1.4e-06 | 75 | 117 | 18 | 60 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60
rr+R++ ++e +L+ +L+a Nk L +e+++l+k+v++l
MELO3C004887P1 75 RRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKQVSQLV 117
9***************************************985 PP
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3 | START | 29.8 | 1.4e-10 | 165 | 222 | 2 | 59 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHH CS
START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvla 59
+aee ++++++ka+ ++ Wv+++ +++g++++ +f+ s+++sg a+ra+g+v +++
MELO3C004887P1 165 IAEEILAAFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVGLEPM 222
789999***********************************************99887 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MAMAHHRENG DGGINGHLDS TGKYVRYTTE QVEALERVYA ECPKPSSLRR QQLVRDCPIL 60 ANIEPKQIKV WFQNRRCREK QRKEASRLQS LNSKLTAMNK LLMEENDRLQ KQVSQLVCEN 120 GYMRQHLQTT NAPAATTTDA ACDSVATTPQ LSLRDASSPA GLLSIAEEIL AAFLSKATGT 180 AVDWVQMPGM KPGPDSVGIF AISQSCSGVA ARACGLVGLE PMKASMFILL I*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | LN681928 | 1e-123 | LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004. |
GenBank | LN713266 | 1e-123 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Publications
? help Back to Top |
- Lian H,Li X,Liu Z,He Y
HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis. J. Exp. Bot., 2013. 64(11): p. 3397-410 [PMID:23918970] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Baima S, et al.
Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module. Mol Plant, 2014. 7(6): p. 1006-1025 [PMID:24777988] - Jia X, et al.
Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] - Roodbarkelari F,Du F,Truernit E,Laux T
ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response. BMC Biol., 2015. 13: p. 74 [PMID:26358077] - Shi B, et al.
Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis. PLoS Genet., 2016. 12(7): p. e1006168 [PMID:27398935]
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