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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
MELO3C004665P1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
B3 |
| Protein Properties |
Length: 189aa MW: 21212.2 Da PI: 6.3878 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MELO3C004665P1 | genome | MELONOMICS | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 31.2 | 3.8e-10 | 122 | 180 | 1 | 54 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrk 54
f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +sW++++iyr+
MELO3C004665P1 122 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNSWTFRHIYRG 180
99*****************************9545444.38***************9976 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 189 aa
Download sequence Send
to blast |
MQCNLFGLRT GERKNINSEL WHACAGPLVS LPPVGSLVVY FPQGHSEQVA ASMNKETDFI 60
PNYPNLPSKL ICMLHNVTLH ADPETDEVYA QMTLQPVNKY EKEALLASDI GLKQSRQPAE 120
FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDYSMQPPAQ ELVARDLHDN SWTFRHIYRG 180
MEPFIYFP*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Act as a transcriptional activator of several tropic stimulus-induced (TSI) genes, including SAUR50. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Required for differential growth responses of aerial tissues. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF19. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF5. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:16371470, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB112671 | 0.0 | AB112671.1 Cucumis sativus CsARF1 mRNA for auxin response factor 1, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Perilli S, et al.
RETINOBLASTOMA-RELATED protein stimulates cell differentiation in the Arabidopsis root meristem by interacting with cytokinin signaling.
Plant Cell, 2013. 25(11): p. 4469-78
[PMID:24285791] - Hu J,Zhang Y,Wang J,Zhou Y
Glycerol affects root development through regulation of multiple pathways in Arabidopsis.
PLoS ONE, 2014. 9(1): p. e86269
[PMID:24465999] - Mellor N, et al.
Modelling of Arabidopsis LAX3 expression suggests auxin homeostasis.
J. Theor. Biol., 2015. 366: p. 57-70
[PMID:25446711] - Gupta A,Singh M,Laxmi A
Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis.
Plant Physiol., 2015. 168(1): p. 307-20
[PMID:25810094] - Youn JH, et al.
ARF7 increases the endogenous contents of castasterone through suppression of BAS1 expression in Arabidopsis thaliana.
Phytochemistry, 2016. 122: p. 34-44
[PMID:26608667] - Porco S, et al.
Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3.
Development, 2016. 143(18): p. 3340-9
[PMID:27578783] - Sun Y, et al.
Manipulation of Auxin Response Factor 19 affects seed size in the woody perennial Jatropha curcas.
Sci Rep, 2017. 7: p. 40844
[PMID:28102350] - Wójcikowska B,Gaj MD
Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
Plant Cell Rep., 2017. 36(6): p. 843-858
[PMID:28255787] - Carey NS,Krogan NT
The role of AUXIN RESPONSE FACTORs in the development and differential growth of inflorescence stems.
Plant Signal Behav, 2017. 12(4): p. e1307492
[PMID:28340328] - Olmo R, et al.
Molecular Transducers from Roots Are Triggered in Arabidopsis Leaves by Root-Knot Nematodes for Successful Feeding Site Formation: A Conserved Post-Embryogenic De novo Organogenesis Program?
Front Plant Sci, 2017. 8: p. 875
[PMID:28603536] - Sheng L, et al.
Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
Development, 2017. 144(17): p. 3126-3133
[PMID:28743799] - Lee K,Seo PJ
High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis.
Planta, 2017. 246(4): p. 797-802
[PMID:28766014] - Ayala-Rodríguez JÁ,Barrera-Ortiz S,Ruiz-Herrera LF,López-Bucio J
Folic acid orchestrates root development linking cell elongation with auxin response and acts independently of the TARGET OF RAPAMYCIN signaling in Arabidopsis thaliana.
Plant Sci., 2017. 264: p. 168-178
[PMID:28969797] - Nakamura M, et al.
Auxin and ROP GTPase Signaling of Polar Nuclear Migration in Root Epidermal Hair Cells.
Plant Physiol., 2018. 176(1): p. 378-391
[PMID:29084900] - Hong L, et al.
Alternative polyadenylation is involved in auxin-based plant growth and development.
Plant J., 2018. 93(2): p. 246-258
[PMID:29155478] - Lee K,Park OS,Seo PJ
Arabidopsis ATXR2 deposits H3K36me3 at the promoters of LBD genes to facilitate cellular dedifferentiation.
Sci Signal, 2018.
[PMID:29184030] - Prát T, et al.
WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
PLoS Genet., 2018. 14(1): p. e1007177
[PMID:29377885] - Kimura T, et al.
Asymmetric Auxin Distribution is Not Required to Establish Root Phototropism in Arabidopsis.
Plant Cell Physiol., 2018. 59(4): p. 823-835
[PMID:29401292] - Schoenaers S, et al.
The Auxin-Regulated CrRLK1L Kinase ERULUS Controls Cell Wall Composition during Root Hair Tip Growth.
Curr. Biol., 2018. 28(5): p. 722-732.e6
[PMID:29478854] - Huang KL, et al.
The ARF7 and ARF19 Transcription Factors Positively Regulate PHOSPHATE STARVATION RESPONSE1 in Arabidopsis Roots.
Plant Physiol., 2018. 178(1): p. 413-427
[PMID:30026290] - Hablak SG
Features inheritance of root system Arabidopsis thaliana (L.) Heynh. the interaction of genes CTR1 AND ALF3, NPH4 and IAR2.
Tsitol. Genet., 2019.
[PMID:30484609] - Orosa-Puente B, et al.
Root branching toward water involves posttranslational modification of transcription factor ARF7.
Science, 2018. 362(6421): p. 1407-1410
[PMID:30573626]
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