![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C004579P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 27200 Da PI: 4.4649 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.7e-17 | 54 | 104 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+++Aa+a++ a++ ++g MELO3C004579P1 54 PSYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATPDMAARAHDVAALTIKG 104 57*****998.**********854...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.8E-12 | 54 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.95E-29 | 54 | 114 | No hit | No description |
PROSITE profile | PS51032 | 22.576 | 55 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-20 | 55 | 113 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-35 | 55 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-31 | 55 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 56 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 78 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MANATVPDTD SGGANSSSSS SSSTSGSISS PSKQAIGDRR PKRGRESSNN SAHPSYRGVR 60 MRAWGKWVSE IREPKKKSRI WLGTFATPDM AARAHDVAAL TIKGNSAILN FPELAASFPR 120 PASSSPRDVQ SAAALAASMQ LPDVMISPPP PPPSPPSSPP CSSSSELDQS TPEELSEIVV 180 LPSLGTGYDE SAESVTEFVF DEWQYSYGPW DQEKESSKEE EEGYEYFIDQ TAMAERECVI 240 PTALFQPLSF SW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 53 | 113 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681847 | 0.0 | LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003. | |||
GenBank | LN713259 | 0.0 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008458661.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 2e-56 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A1S3C7X6 | 0.0 | A0A1S3C7X6_CUCME; dehydration-responsive element-binding protein 3-like | ||||
STRING | XP_008458661.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-43 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|