PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004101P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 227aa    MW: 25790.4 Da    PI: 5.3376
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004101P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-13114204183
                     EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEE CS
              B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFk 83 
                     f+k+lt+ dv+ s grl l k+f++++       +++ ++++ +t++d++gr+++++++ + ++  yvltk Wk+F ++ngL    +f+++ 
  MELO3C004101P1 114 FVKQLTKTDVTDSqGRLALHKEFVNRNlvpmfngDEILTNGISVTVYDSEGREYDMTFRLWTSK-LYVLTKSWKKFYHDNGLTrPDEFITLW 204
                     89*******998879*****************8855667899****************988886.8****************9455566554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-15111205IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-16112218No hitNo description
SuperFamilySSF1019365.49E-16112213IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.5E-7114222IPR003340B3 DNA binding domain
PfamPF023624.1E-10114220IPR003340B3 DNA binding domain
PROSITE profilePS5086310.32115222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVKVGYIYNN KIVEKEVYEA CLALCEMKKS SEPFEEPNQF PSSTSISMVD DQPPVVNEQP  60
PIVNEHAPVV NEALLNNNNN NNENVAAVVA DRDLGRLPPM VVIQNIIGEC SPPFVKQLTK  120
TDVTDSQGRL ALHKEFVNRN LVPMFNGDEI LTNGISVTVY DSEGREYDMT FRLWTSKLYV  180
LTKSWKKFYH DNGLTRPDEF ITLWMFRHVV NHKLCFAIMR GNVEGH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A0L7L08e-98A0A0A0L7L0_CUCSA; Uncharacterized protein
STRINGXP_008460492.11e-169(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.13e-24B3 family protein