PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003968P5
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 226aa    MW: 26119.6 Da    PI: 5.0825
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003968P5genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407e-135597754
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      Er+RR+++N+++  Lr ++P+      +K++Ka+i + A+eYI++L
  MELO3C003968P5 55 LSERNRRKKLNDRLLALRAVVPNI-----TKMDKASIIKDAIEYIQEL 97
                    57*********************7.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.194897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.61E-1251101No hitNo description
SuperFamilySSF474591.18E-1653112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1654112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-1454103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-105597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MENILDEYRY YWETNMFLQT EEFDSWGLDE AFYGSYDSSS PDGTMSSLEA SKNILSERNR  60
RKKLNDRLLA LRAVVPNITK MDKASIIKDA IEYIQELRSE ENRIETEISN LESGKFKSTT  120
SNEDDDRENN NRNTRKRGTK NSNRQLREKP TSFPIEILDL NVSYMGEKTM VVSMTCERRN  180
DAVLKICQVI ESLKLKIITA NITVVANRLL STLFLEVQFL SFLKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1445107163Transcription factor MYC2
5gnj_B4e-1445107163Transcription factor MYC2
5gnj_E4e-1445107163Transcription factor MYC2
5gnj_F4e-1445107163Transcription factor MYC2
5gnj_G4e-1445107163Transcription factor MYC2
5gnj_I4e-1445107163Transcription factor MYC2
5gnj_M4e-1445107163Transcription factor MYC2
5gnj_N4e-1445107163Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818471e-129LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132591e-129LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451133.11e-157PREDICTED: transcription factor bHLH35-like isoform X2
SwissprotQ2HIV93e-69BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S3BQT41e-155A0A1S3BQT4_CUCME; transcription factor bHLH35-like isoform X2
STRINGXP_008451126.11e-152(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.16e-55bHLH family protein