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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C003578P3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 765aa MW: 84992.9 Da PI: 5.443 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.3e-18 | 19 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av + g++Wk+Ia ++ Rt+ qc +rwqk+l MELO3C003578P3 19 KGQWTPEEDEILRQAVDHFKGKNWKKIAGYFK-DRTDVQCLHRWQKVL 65 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 65.9 | 7.4e-21 | 71 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++d+v+++G++ W+tIa +++ gR +kqc++rw+++l MELO3C003578P3 71 KGPWSKEEDEIIIDLVNKYGPKKWSTIATHLP-GRIGKQCRERWHNHL 117 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 49.1 | 1.3e-15 | 123 | 165 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ MELO3C003578P3 123 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 165 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.964 | 14 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 18 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-16 | 19 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.23E-15 | 20 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.5E-25 | 21 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.53E-13 | 22 | 65 | No hit | No description |
PROSITE profile | PS51294 | 33.361 | 66 | 121 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.83E-31 | 68 | 164 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-19 | 70 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-19 | 71 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.09E-17 | 73 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-28 | 78 | 120 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.1E-22 | 121 | 172 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.563 | 122 | 172 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 122 | 170 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 123 | 166 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.08E-12 | 125 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 765 aa Download sequence Send to blast |
MFFSGVFRRT SGPTRRSTKG QWTPEEDEIL RQAVDHFKGK NWKKIAGYFK DRTDVQCLHR 60 WQKVLNPELV KGPWSKEEDE IIIDLVNKYG PKKWSTIATH LPGRIGKQCR ERWHNHLNPN 120 INKEAWTQEE ELALIRAHQI YGNRWAELTK FLPGRTDNAI KNHWNSSVKK KLDSYLASGL 180 LSQFQDPVPA GQPNQLPVSS SKVLGGRNDS GLKGMDTEEI SECSQDAKIS DSLMIDSACA 240 TLNIRKEFRL TKDLGLGKEQ SASPVSNSEP YYRPPMEVIT CPIAEFAQEM GHLSHSQQNL 300 SHDCRTTSNR EHQCDLNEFP SISSLQVAKE ASQFQSMDHG MGESHGIGDS VQTSLTVKGA 360 VTSAQAECMF ISDDECCRVL FSDTKSDRGH LTSNLKGPCV TEMCDYEVPV RSLGTPKVEN 420 NHTLTSQYNH PSGADVQEKN SFGQSRMLIP SMVSVNGDMI LLGDTGSNLF VGAVEHECVT 480 SQQNRFVYKD GTSKPSYFDV ADNPEMQEQP GGSEDLPKPI CENTFATAAA AAEADGTGTC 540 TRLDGTAKQN DKHQDSRALC YEPPRFPSLD VPFFSCDLIQ SGSEMQEYSP LGIRQLMMSS 600 LNSVTPFRLW DSPSHDTSPD AVLKSAAKTF ASTPSILKKR HRDLMSPLSE RRTDKKLETD 660 VTSSLTENFS RLDVVFDNGS VKASILSPSN LKKSIEDPAE DKENMHCTFE DSNESLDVMI 720 PENGFPKSCS QDYTKQGTAD TEMISVQSTS EIVSHFSTNF LVDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-71 | 19 | 172 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-71 | 19 | 172 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681824 | 0.0 | LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008466237.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Refseq | XP_008466238.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
TrEMBL | A0A1S3CS52 | 0.0 | A0A1S3CS52_CUCME; myb-related protein 3R-1-like | ||||
STRING | XP_008466237.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 0.0 | Homeodomain-like protein |