PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003427P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 308aa    MW: 34436.6 Da    PI: 6.6207
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003427P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l++ v++ G g+W+  ++  g++R++k+c++rw +yl
   MELO3C003427P1 14 KGPWTPEEDEKLIEFVAKNGHGSWRNLPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.81e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+  +++++ +lG++ W++Ia++++ gRt++++k++w+++l
   MELO3C003427P1  67 RGKFSEEEEASIIKLHSLLGNR-WSKIASHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-26564IPR009057Homeodomain-like
PROSITE profilePS5129419.997961IPR017930Myb domain
SuperFamilySSF466891.3E-3111108IPR009057Homeodomain-like
SMARTSM007171.3E-151363IPR001005SANT/Myb domain
PfamPF002491.9E-171461IPR001005SANT/Myb domain
CDDcd001674.23E-121661No hitNo description
PROSITE profilePS5129427.91162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2765116IPR009057Homeodomain-like
SMARTSM007171.5E-1766114IPR001005SANT/Myb domain
PfamPF002491.1E-1667112IPR001005SANT/Myb domain
CDDcd001674.90E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRSPCCDEN GVKKGPWTPE EDEKLIEFVA KNGHGSWRNL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEEASIIK LHSLLGNRWS KIASHLPGRT DNEIKNFWNT HLRKKLLQMG  120
IDPNTHKPRT DLNHFLNLSQ LFNNGIPNPL NSDHLKLQAE IAKLQLLQNL CQLLNPTTAI  180
PTTINNNNGL QNPNPSQFQA GCSSTGFAQV SGFEDGDKIK ANKLEEMGSF DYVIQPENYY  240
QLPPLILESP DGSTSNVNQQ IESIETNPLC FSTNSNSPTP SSSIFDSLES LMNDDEASGS  300
YWKNILQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
1h8a_C3e-291411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465998.10.0PREDICTED: transcription factor MYB39
SwissprotQ8GWP03e-84MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A1S3CQ730.0A0A1S3CQ73_CUCME; transcription factor MYB39
STRINGXP_008465998.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-82myb domain protein 93