PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003149P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 242aa    MW: 27308.6 Da    PI: 8.308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003149P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000137092123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H+++H
  MELO3C003149P1 70 YSCSFCKREFRSAQALGGHMNVH 92
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.47E-66796No hitNo description
SMARTSM003550.0067092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.247097IPR007087Zinc finger, C2H2
PfamPF139123.9E-67093IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEPKRCWMMW EKKKKKKNLI TTSSDHHFLQ ATTTTIKSSS SSFDDSWEEQ AFADDAAGRL  60
GGCVWPPRSY SCSFCKREFR SAQALGGHMN VHRRDRARLK HESFKPQIET HLQIPPTLQQ  120
QVCDDNLVFN PNPKSSSSFC LSTFPSQNLV ESDLTPLTTT TATLHKWHQS SDLSQKTSDD  180
NDLLKDEEAA VFCNKRKRTS DHSPSSTVAF FFRSEVIGLS HSSVEDLDLE LRLGGGRPKL  240
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-136592229superman protein
2l1o_A2e-136592229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818880.0LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448173.11e-180PREDICTED: probable transcriptional regulator RABBIT EARS
RefseqXP_008448184.11e-180PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A1S3BJY11e-179A0A1S3BJY1_CUCME; probable transcriptional regulator RABBIT EARS
STRINGXP_008448173.11e-179(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.13e-28C2H2 family protein