PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002573P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 368aa    MW: 40596.4 Da    PI: 8.2132
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002573P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1614.5e-50221671128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yL++k+++++l++  +i+e+d+yk++PwdLp+k+  +++ewyfF++r++ky++g r+nra+ sgyWkatg+dk+++s 
  MELO3C002573P1  22 LPPGFRFHPTDEELVVHYLTRKLSSSPLPA-PIIAELDLYKFDPWDLPSKAVFGKNEWYFFTPRERKYPNGARPNRAAISGYWKATGTDKPIMSC 115
                     79***************************9.88***************77778999*************************************98 PP

             NAM  96 .........kgel............vglkktLvfykgrapkgektdWvmheyrl 128
                              +  +            vg+kk Lvfy gr pkg+kt+W+mheyrl
  MELO3C002573P1 116 nyninnngsN--NnnnnnnnngiqkVGVKKALVFYGGRPPKGVKTNWIMHEYRL 167
                     7777766550..0555667777788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5916203IPR003441NAC domain
PROSITE profilePS5100556.66822203IPR003441NAC domain
PfamPF023651.6E-2623167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MMDEDYIESS DSSSNTSAHL QLPPGFRFHP TDEELVVHYL TRKLSSSPLP APIIAELDLY  60
KFDPWDLPSK AVFGKNEWYF FTPRERKYPN GARPNRAAIS GYWKATGTDK PIMSCNYNIN  120
NNGSNNNNNN NNNNGIQKVG VKKALVFYGG RPPKGVKTNW IMHEYRLLHL PNNNPNPLHP  180
HLTNPTKPSL KLDDWVLCRI YMKNIAQASI IDREMEELSR VAARPPKTVV GGGHKGTGNC  240
YMDVVALSTE GDHDIINNHQ NNSNNISELP SSNCSSKRGL TCQLWSSGGA TASNEGGKPL  300
RLDLMNSYSG GATTAGTEEN TVSYMSLLNQ LPVQNAAFQS GAPLIGSLND GVLRQHFQLP  360
TNINWNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-69132046169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442252.10.0PREDICTED: NAC transcription factor 25-like
SwissprotQ8GY424e-84NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A1S3B6120.0A0A1S3B612_CUCME; NAC transcription factor 25-like
STRINGXP_008442252.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2480833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-81NAC domain containing protein 25