PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C002228P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 307aa MW: 33490.6 Da PI: 5.9773

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C002228P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.8	2.8e-14	101	145	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky MELO3C002228P1 101 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 145 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.997	94	150	IPR017930	Myb domain
SuperFamily	SSF46689	4.93E-17	96	151	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.4E-17	97	148	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-10	98	148	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-11	100	145	IPR009057	Homeodomain-like
CDD	cd00167	1.76E-9	101	146	No hit	No description
Pfam	PF00249	1.8E-11	101	145	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MLMPMPAPGD AVMDAAGVTK EFMLFGVRVV VDPMRKSVSM NNLSQYEHPL EASIDDNSRN 60 SKTTVSAADR KEDSAAGYAS ADDAVPNSGG NRERERKRGV PWTEEEHKLF LLGLQKVGKG 120 DWRGISRNFV KTRTPTQVAS HAQKYFLRRS NLNRRRRRSS LFDITTDTVK EAAEEEQIQV 180 QDNSSQLQSL LPPPPPETCN INVYHPMIPT FPLSVCPAII PIPIPMETDT SHEFNLETDT 240 SSIGAEVLPL SGTTLEFNLN SKSTLNSGAL SLNLALPSDS SNSSMKHSAF QGMSSISNGD 300 NIISVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008437839.1	0.0	PREDICTED: transcription factor MYB1R1
Swissprot	Q2V9B0	2e-69	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A1S3AUY2	0.0	A0A1S3AUY2_CUCME; transcription factor MYB1R1
STRING	XP_008437839.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	3e-55	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]