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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C002148P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1104aa MW: 120704 Da PI: 8.0861 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 19.6 | 2e-06 | 296 | 314 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H C+k+CH G C+pC+ MELO3C002148P1 296 CGRHWCEKICHVGTCDPCQ 314 ******************6 PP | |||||||
2 | zf-NF-X1 | 21.9 | 3.7e-07 | 418 | 435 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CGkH+C++ CH G+C pC MELO3C002148P1 418 CGKHRCKEVCHAGDCAPC 435 ****************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 3.53E-5 | 118 | 188 | No hit | No description |
PROSITE profile | PS50016 | 8.564 | 126 | 187 | IPR019787 | Zinc finger, PHD-finger |
PROSITE profile | PS50089 | 9.524 | 129 | 185 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 129 | 184 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 1.64E-5 | 218 | 279 | No hit | No description |
SMART | SM00438 | 0.039 | 241 | 259 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.8 | 243 | 258 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.18E-10 | 286 | 334 | No hit | No description |
Pfam | PF01422 | 8.0E-5 | 296 | 313 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0019 | 296 | 315 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.47E-9 | 350 | 393 | No hit | No description |
Pfam | PF01422 | 0.0072 | 360 | 377 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0045 | 360 | 379 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.96E-13 | 408 | 456 | No hit | No description |
Pfam | PF01422 | 7.6E-6 | 418 | 435 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 1.3E-4 | 418 | 437 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 18 | 476 | 487 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.085 | 508 | 532 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.57E-7 | 508 | 547 | No hit | No description |
SMART | SM00438 | 0.015 | 514 | 533 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 9.10E-6 | 561 | 609 | No hit | No description |
Pfam | PF01422 | 8.6 | 571 | 588 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.023 | 571 | 589 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0048 | 624 | 639 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.1 | 624 | 654 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.25E-5 | 652 | 701 | No hit | No description |
Pfam | PF01422 | 16 | 656 | 682 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.089 | 663 | 684 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01424 | 1.6E-5 | 793 | 857 | IPR001374 | R3H domain |
Gene3D | G3DSA:3.30.70.330 | 4.7E-7 | 896 | 961 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1104 aa Download sequence Send to blast |
MSSNVRNVRK DRSRIPASSA RKEWVPRGST TTTTTTETTD IHVNRPLNVN SNDNRNGLEL 60 NSSPPHPVYR DRGNHGQRVY VGPRRNQRKD KEKDKEKSGD QGEKELRISN LPQLVHEIQE 120 KLTKGTVECM ICYDMVRRSA PIWSCSSCFC IFHLTCIKKW ARAPTSTDLV AEKNQGLNWR 180 CPGCQSVQLI SSKEIRYVCF CGKRQDPPSD LYLTPHSCGE PCGKPLDREM LVAGGSKEDL 240 CPHNCVLQCH PGPCPPCKAF APPRLCPCGK KLITTRCSDR KSTLTCGQRC EKLLDCGRHW 300 CEKICHVGTC DPCQVQVSAS CFCKKKKELV LCGSMTLKGE VNTEDGVFPC SSICGKSLNC 360 GNHVCREICH PGPCGGCELM PDMIRTCYCG KTRLQDERTS CLDPIPTCSE LCEKLLPCGK 420 HRCKEVCHAG DCAPCLVQVV QKCRCGSTSR NVECYKTSSP TDIFTCEKPC EWKKNCGRHR 480 CSERCCPLSN SSYNHLGDWD PHFCVMRCGK KLRCRQHSCQ SLCHSGHCSP CPETIFTDLT 540 CACGKTSIPP PLPCGTPPPS CQLPCSVPQP CGHSSTHSCH FGDCPPCTVP IAKECIGGHV 600 VLRNIPCGSR DIRCNKLCGK TRQCGMHACN RTCHPPPCDT VAGSDSVQKT SCGQTCGAPR 660 RDCRHTCTAP CHPSAPCPDA RCEFPVVITC SCGRITASVP CDAGGSSIGF NTDTLYASII 720 QKLPVPLQPI EATGKKIPLG QRKLTCDEEC SKLERNRVLA DAFDITPPNL DALHFGDSSA 780 TELLADLFRR DSKWVLAVEE RCKFLVLGKN RGGIGGLKVH VFCPMPKDKR DAVRLIAERW 840 KVAINSVGWE PKRFITIHVT PKSKVPPRVL GIKGSTTTST LHPPPYDPLV DMDPRLVVSF 900 PDLPRESDIS ALVLRFGGEC ELVWLNDKNA LAVFSDPARA ATAMRRLDHG TAYHGASLLQ 960 NGGASASSNT NAWGGGENAK EGASKSSNPW KRAVVQDSSW KDTSWGDEEW SGPSIDVQAS 1020 VWKREAAPFS ASLNRWHALD TEPSVSSSTQ SSEHNLGNRV GNSSLGSESS TSRSLSSGGV 1080 MQVVTDDGTN MSEVADDWEK AYD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008466671.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A1S3CRU5 | 0.0 | A0A1S3CRU5_CUCME; NF-X1-type zinc finger protein NFXL1 | ||||
STRING | XP_008466671.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6972 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |