PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002057P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 566aa    MW: 62713 Da    PI: 9.0593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002057P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.35.8e-18269318255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f++Lrel+P +    ++K +Ka+ L +++eYI+ Lq
  MELO3C002057P2 269 RSKHSATEQRRRSKINDRFQKLRELIPRS----DQKRDKASFLLEVIEYIQFLQ 318
                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-22264326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-18266326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.091267317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.67E-15269322No hitNo description
PfamPF000101.9E-15269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MELPQPPRPL GTEGRKPTHD FLSLYSHSTA HQQDPSQSFQ GGFLKTHDFL RPLERTGKTC  60
AKEEKTINVS TVERAAPTSG TQAHNSPAER LLPGGIGTYS ISHISYFNQR VPKPEGSVFP  120
VPQASNTDKS DDNSHCSSLS GNGFTLWEES AVKKGKTRKE NLGEKPGLKE SPAKIEQWAV  180
TTERPIQSSS SNHRSSFSSL SPSQPSGQQS RSFGEMLKST VNVSSTEEEL DDDKAFVIKK  240
ESSPSTAYKG DLKINIGGKC SDQKANTPRS KHSATEQRRR SKINDRFQKL RELIPRSDQK  300
RDKASFLLEV IEYIQFLQEK VRKYESSPPQ GWYHEPAKLI PCRNNCNPAQ CYIDQSQIAK  360
SGPVFIFAGS DEKNMCHSPA FPRCSHNPVE SEVSTNTTFR EVDQHPGTNN KTSYPMLEPR  420
HFTSVISEGA KTRLHSQVAH NADNKPCEMQ PLSCEVRSCT TNIVDVNNKL KEPEQRIDGG  480
RISISGAYSQ GLLKILTQAL QSSGVDMSQA SVAVQIELGK RTNYRETVPT PIVDDSARPS  540
ERRSVGTRVV AGEEMEQALR KKQKT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454608.10.0PREDICTED: transcription factor BIM1-like isoform X3
TrEMBLA0A1S3BZ470.0A0A1S3BZ47_CUCME; transcription factor BIM1-like isoform X3
STRINGXP_008454530.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-101bHLH family protein