PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C001962P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 439aa    MW: 48845.9 Da    PI: 8.381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C001962P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding544e-171559147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+
   MELO3C001962P1 15 REKWTEEEHQRFLEALKLYGRG-WRQIKEHVG-TKTAVQIRSHAQKF 59
                     789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.24E-16963IPR009057Homeodomain-like
PROSITE profilePS5129421.9711064IPR017930Myb domain
TIGRFAMsTIGR015573.2E-161362IPR006447Myb domain, plants
SMARTSM007179.0E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-91555IPR009057Homeodomain-like
PfamPF002497.0E-151558IPR001005SANT/Myb domain
CDDcd001674.61E-111760No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MHEQVRKPYT ISKQREKWTE EEHQRFLEAL KLYGRGWRQI KEHVGTKTAV QIRSHAQKFF  60
SKVVRESSGS NESSINPIEI PPPRPKRKPL HPYPRKAVDS LKAISVARES ERSPSPNLSL  120
AEKETHSPTS VLTAFSSDDQ ISAVSEQHNR CPSPISQAVD MQPTRLSPVR KGELYLPSKS  180
NVGEEKGMLS LESTSGQFPE DFLTLKFKPG SASKKVDNKL HSPVKSIKLF GRTVMVTNDK  240
QPSLLDFEVT ETLTFEGDSK RECKVSAENS VEMLPSKHMD VSLALGMDNN GDLNMPPGGA  300
PTLTLGNQDK SVPYVKAFPN APQTCWSLYQ NVPYFYLAPS DQTSTGTSTD HIMEERIQND  360
NSQESSFADS CSGSPRKDKN ETQSPEVECQ EPCLVGRGNA NESKKGFVPY KRCLAQRDTS  420
SALIVSEERE SRRARVCS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439595.10.0PREDICTED: protein REVEILLE 2-like
TrEMBLA0A1S3AZR80.0A0A1S3AZR8_CUCME; protein REVEILLE 2-like
STRINGXP_008439595.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.13e-45MYB_related family protein