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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C000922P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 128aa MW: 14636.8 Da PI: 9.0865 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 116 | 3.8e-36 | 19 | 119 | 2 | 99 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfrFhPtdeelv++yL++kve+++l++ e ik++diyk++PwdLp k+ ++kewyf++kr +ky+++ r+nr+t sg+Wkatg dk MELO3C000922P1 19 LPGFRFHPTDEELVSFYLRRKVEKRPLSI-ELIKQIDIYKHNPWDLPYgsscsKMGLGDKEWYFYCKRGRKYKNSIRPNRVTGSGFWKATGIDKG 112 59***************************.89***************557777777799************************************ PP NAM 92 vlskkgel 99 v+s +g l MELO3C000922P1 113 VYS-NGVL 119 **9.5444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 35.567 | 18 | 127 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.07E-36 | 19 | 121 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-16 | 20 | 111 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
METPEVCNGE GDQEEEISLP GFRFHPTDEE LVSFYLRRKV EKRPLSIELI KQIDIYKHNP 60 WDLPYGSSCS KMGLGDKEWY FYCKRGRKYK NSIRPNRVTG SGFWKATGID KGVYSNGVLV 120 KALKLIG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-32 | 10 | 117 | 6 | 109 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN689546 | 1e-103 | LN689546.1 Cucumis melo genomic scaffold, unassembled_sequence36985. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004139890.2 | 7e-82 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Refseq | XP_008466914.1 | 4e-83 | PREDICTED: transcription factor JUNGBRUNNEN 1-like, partial | ||||
Swissprot | Q9ZVH0 | 2e-49 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A0A0K418 | 2e-80 | A0A0A0K418_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A1S3CSB0 | 8e-82 | A0A1S3CSB0_CUCME; transcription factor JUNGBRUNNEN 1-like | ||||
STRING | XP_008466914.1 | 1e-82 | (Cucumis melo) | ||||
STRING | XP_004159185.1 | 3e-81 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 8e-52 | NAC family protein |
Publications ? help Back to Top | |||
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