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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
MDP0000947167 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 340aa MW: 38142.1 Da PI: 9.6468 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000947167 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 392.8 | 4.9e-120 | 1 | 339 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89
mdd g+re r+k+ +y+ a + l +n+ +q+m++++erda+i+ernla+sekkaa+aerdmaflqrd+a+aern a++erd+++++l +++n
MDP0000947167 1 MDDGGHREngRHKAdQYKAAqgQWLMHNQpsMKQVMAIMSERDAAIQERNLAFSEKKAALAERDMAFLQRDAAIAERNSAMMERDSAIATLHYRDN 96
9*****999*****99*9554444444432146*************************************************************** PP
GAGA_bind 90 sla....salpvgvqvlsgtksidslqqlse....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
sl+ s++p+g+q+++g+k+++++qq+++ p++++ ++++r+++++++ + ++ + + k++++k+p+e+k+++++kk++ks +k
MDP0000947167 97 SLNsgnvSSCPPGCQISRGVKHMHHTQQQQHvhhmPHMNEASYGTRDMHTSDSITMPPET------SAPTKSRQPKRPREPKTTQPNKKPSKSPRK 186
99999999******************9977778899*************88876644433......233334556677777777777777777777 PP
GAGA_bind 178 vkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPL 244
k+es+d + sk+++k++dl+ln+v++Dest+P+P+CsCtG lrqCYkWGnGGWqS+CCttt+S+yPL
MDP0000947167 187 MKRESEDLNkmtfdklhdwkggqdmggegddlnkqvvvSKSDWKCQDLGLNQVAYDESTMPAPMCSCTGLLRQCYKWGNGGWQSSCCTTTMSMYPL 282
777776633477778889****************************************************************************** PP
GAGA_bind 245 PvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
P+++++r+aR++grKmS++af+klL++L+aeG+dlsnpvDLkdhWAkHGtn+++ti+
MDP0000947167 283 PAVPNKRHARVGGRKMSGSAFNKLLSRLTAEGHDLSNPVDLKDHWAKHGTNRYITIK 339
********************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MDDGGHRENG RHKADQYKAA QGQWLMHNQP SMKQVMAIMS ERDAAIQERN LAFSEKKAAL 60
AERDMAFLQR DAAIAERNSA MMERDSAIAT LHYRDNSLNS GNVSSCPPGC QISRGVKHMH 120
HTQQQQHVHH MPHMNEASYG TRDMHTSDSI TMPPETSAPT KSRQPKRPRE PKTTQPNKKP 180
SKSPRKMKRE SEDLNKMTFD KLHDWKGGQD MGGEGDDLNK QVVVSKSDWK CQDLGLNQVA 240
YDESTMPAPM CSCTGLLRQC YKWGNGGWQS SCCTTTMSMY PLPAVPNKRH ARVGGRKMSG 300
SAFNKLLSRL TAEGHDLSNP VDLKDHWAKH GTNRYITIK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
