PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000946515
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 364aa    MW: 39657.3 Da    PI: 4.4909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000946515genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.19e-102873271055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    r+RR+++N+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  MDP0000946515 287 RKRREKMNERLRALQGLVPNG-----TKVDISTMLEEAVHYVKFLQ 327
                    9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-14276342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.964277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-12282336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-11283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-11286331No hitNo description
PfamPF000105.2E-7287327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEDIGAVSEG EWTSLSGMYT AEEVDFMSQL LGNSSNQTSS MGIPEASWPG GYYEGSHYYS  60
SETSDSNSQE ANLSGGTRTF YPTSSNESYY LNESSQPMLA TNNNNISMSI DFGAGDVIKT  120
LNSYLIEGDH DQCLNQETSE GNPEERGGNP AEAVALGNQK FDMTAAQEQS MEEINPTKNS  180
LKRSQSLENV QMKKMNIKAK KSRQVTTSIN EEDCTTAGLN RQSSSCCSXE DQSSVASHSH  240
ENSQELSGGV SVTSTSSLSP TVASLNLSGK SRARRGSATD PQSLYARKRR EKMNERLRAL  300
QGLVPNGTKV DISTMLEEAV HYVKFLQLQI KLLSSDDMWM YAPICYNGMD LGLDPKLTTP  360
QQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286291RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008373007.20.0transcription factor bHLH85-like
TrEMBLA0A498JP180.0A0A498JP18_MALDO; Uncharacterized protein
STRINGXP_008373007.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-52ROOT HAIR DEFECTIVE 6-LIKE 2