PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000946515 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 364aa MW: 39657.3 Da PI: 4.4909 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.1 | 9e-10 | 287 | 327 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+++N+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq MDP0000946515 287 RKRREKMNERLRALQGLVPNG-----TKVDISTMLEEAVHYVKFLQ 327 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.24E-14 | 276 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.964 | 277 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-12 | 282 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.7E-11 | 283 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.39E-11 | 286 | 331 | No hit | No description |
Pfam | PF00010 | 5.2E-7 | 287 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MEDIGAVSEG EWTSLSGMYT AEEVDFMSQL LGNSSNQTSS MGIPEASWPG GYYEGSHYYS 60 SETSDSNSQE ANLSGGTRTF YPTSSNESYY LNESSQPMLA TNNNNISMSI DFGAGDVIKT 120 LNSYLIEGDH DQCLNQETSE GNPEERGGNP AEAVALGNQK FDMTAAQEQS MEEINPTKNS 180 LKRSQSLENV QMKKMNIKAK KSRQVTTSIN EEDCTTAGLN RQSSSCCSXE DQSSVASHSH 240 ENSQELSGGV SVTSTSSLSP TVASLNLSGK SRARRGSATD PQSLYARKRR EKMNERLRAL 300 QGLVPNGTKV DISTMLEEAV HYVKFLQLQI KLLSSDDMWM YAPICYNGMD LGLDPKLTTP 360 QQS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 286 | 291 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008373007.2 | 0.0 | transcription factor bHLH85-like | ||||
TrEMBL | A0A498JP18 | 0.0 | A0A498JP18_MALDO; Uncharacterized protein | ||||
STRING | XP_008373007.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33880.1 | 1e-52 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000946515 |