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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000939744 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | Dof | ||||||||
Protein Properties | Length: 358aa MW: 38638.7 Da PI: 8.798 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.5 | 5.8e-38 | 75 | 135 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nny+lsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+ MDP0000939744 75 PETALKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 135 67899*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-32 | 59 | 128 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.3E-32 | 78 | 133 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.45 | 79 | 133 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 81 | 117 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MVFSSVPVYL DPPNWQQQQT NHHQQGGGSD QNNPQLPLVP SSEARCTSVD GGGGLGSIKP 60 GSMCDRARMA KLPQPETALK CPRCESTNTK FCYFNNYNLS QPRHFCKTCR RYWTRGGALR 120 SVPVGGGCRR NKRSKGGNSS RSKSPGAAGN SSSSTVNSSN SCSASDNIIG HLTHPPPPHQ 180 LPFLPSLHHL PDYGSGDMLG LNNFGINQPG DVEFQHHQYG SDRFGARPNI LGMNNMSSTE 240 HWRSSLLQQQ FPNFLVNLGQ PTSTTHGLYQ FDGGDHQNVV QLPISKPLDH SAGNGVTTTQ 300 MANVKMEQNQ ALNLSRNFLG SLGNDHQYWG SSTTGTGGNA WTDLSGFTTS SSTSHLL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00407 | DAP | Transfer from AT3G55370 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028961720.1 | 0.0 | dof zinc finger protein DOF3.6-like | ||||
TrEMBL | A0A498JFY8 | 0.0 | A0A498JFY8_MALDO; Uncharacterized protein | ||||
STRING | XP_009357720.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF656 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 2e-40 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000939744 |