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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
MDP0000939633 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family |
RAV |
| Protein Properties |
Length: 402aa MW: 43848.8 Da PI: 9.5982 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000939633 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 40.3 | 7.7e-13 | 76 | 124 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+ykGV + +grW A+I++ ++r++lg+f ++eAa a++ a+++++g
MDP0000939633 76 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAATAYDVAAQRFRG 124
89****9888.8*********3.....5**********99*************98 PP
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| 2 | B3 | 96.4 | 1.9e-30 | 207 | 315 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82
f+k+ tpsdv+k++rlv+pk++ae+h ++ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F
MDP0000939633 207 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsgstatitvsASSACKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSF 302
89*************************999766666665533444999************************************************ PP
EE-SSSEE..EEE CS
B3 83 kldgrsefelvvk 95
+++ +++l++
MDP0000939633 303 QRSTGPDKHLYID 315
*876677766665 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 402 aa
Download sequence Send
to blast |
MDGXSSTEES TTSDSISXSP PHHIVTRVEP LAKSAPQVDS LCRVGSGASS VILDSDLSSG 60
GGTGGVEAES RKLPSSKYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AATAYDVAAQ 120
RFRGRDAVTN FKPSSDDEEN DXVEAAFLSS HSKSEIVDML RKHTYNDELE QSKRNYFSYG 180
KRGXSNGPLG LFGTDNSRVQ KAREQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLQSGST 240
ATITVSASSA CKGVLLNFED VGGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLKAGDIV 300
SFQRSTGPDK HLYIDWKTRM SVYNNSNGSN PVQGQXAPVQ MVRLFGVNIF KIPGSSGAGP 360
VDAAAAAAIG GGCNNNIGKR MREMEFLKLE FSKKPRIIGA L*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GU732460 | 0.0 | GU732460.1 Malus x domestica AP2 domain class transcription factor (AP2D36) mRNA, complete cds. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Choi D, et al.
iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
Mol Plant, 2014. 7(5): p. 792-813
[PMID:24380880] - Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
TEMPRANILLO is a regulator of juvenility in plants.
Sci Rep, 2014. 4: p. 3704
[PMID:24424565] - Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Marín-González E, et al.
SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
Plant Physiol., 2015. 169(2): p. 1214-24
[PMID:26243615] - Matías-Hernández L, et al.
TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
Plant Physiol., 2016. 170(3): p. 1624-39
[PMID:26802039]
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