PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000934866
Common NameLOC103445644
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 578aa    MW: 62959.9 Da    PI: 5.4801
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000934866genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000554054431355
                    HHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
            HLH  13 RdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 
                    R+ i +++ eLrel+P+ a      K  s  + Le++++++  Lq
  MDP0000934866 405 RQLIQDRIKELRELIPTgA------KvCSIDSLLERTIKHMLFLQ 443
                    67799************66......44666678888888887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000830.00184386443No hitNo description
PROSITE profilePS5088810.372392442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-4405450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MLGNSLXSPP PLSLSLSLSL CACGDLTNIS LEGLASGVLP DCVNNLDTAT NRESSDIWAS  60
IFPHLVKDND SSYVSSLTEN CLKEEVELAN KHGGLESSNF GSVEIGKLPQ SKSSALSMEH  120
HRLVGVELLD SRKCKGESSG CKDTGMASVI YAHPLSHDPV NIVNLCDFAD LPTTFLDSTA  180
HERINADRVD LHQNEVLHVS EPSVVKFQKG LENLEFQTES GHMDTSSTSM TFPAGCELHE  240
ALGPAFLNQG NYFDWVAGKN GDRITPEIPE GMNTSQLTSA SCQEHLLEAV VANVCQSGSL  300
VKSEKSFCKS MQSLLTTEKC PEPSSRITHT IDSENYSIDQ PSLTGEDMQQ CLSSSGVCGV  360
ISPKWFSSPC PSACSEQLER SSGPSKNSKK RARPGESSRP RPRDRQLIQD RIKELRELIP  420
TGAKVCSIDS LLERTIKHML FLQSVTKHAD KLNKCADAKL CPKEASMLGS SNYERGSSWA  480
VEVGGNLKVC SIIVENLNKN GQMVVELMCE ECSHFLEIAE AIRSSGLTIL KGVTEARGDK  540
TWICFVVEGQ NNRSIHRMDI LWSLVQILQP KNPTQQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.79690.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687650.0HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008382880.10.0transcription factor bHLH155
TrEMBLW0UTD70.0W0UTD7_MALDO; Uncharacterized protein
STRINGXP_008382880.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50272022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-114conserved peptide upstream open reading frame 7