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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000931057 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 226aa MW: 25554.7 Da PI: 10.2638 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 68.4 | 1.2e-21 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd++l++a++ +G ++WktIa++ g++R++k+c++rw++yl MDP0000931057 29 KGAWTTEEDQKLAEAIETHGAKRWKTIASKAGLNRCGKSCRLRWLNYL 76 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 82 | 127 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l MDP0000931057 82 RGNISDQEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 127 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.322 | 24 | 80 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.56E-30 | 27 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-17 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-19 | 29 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 30 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.53E-12 | 31 | 76 | No hit | No description |
SMART | SM00717 | 2.2E-15 | 81 | 129 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.044 | 81 | 131 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.7E-14 | 82 | 127 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 84 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.51E-9 | 86 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MAPVTKESVN RRKMKGGEAM KNTKRKVNKG AWTTEEDQKL AEAIETHGAK RWKTIASKAG 60 LNRCGKSCRL RWLNYLRPNI KRGNISDQEE DLIVRLHKLL GNRWSLIAGR LPGRTDNEIK 120 NYWNSHLSKR MSQKEKENGA NLTRKMISTD HQKDHVQMKE DASLQEAATS TSTTSAASSA 180 ASKGGDQNSN INIDVDDFFD FSNEGSLNLE WVSKFLEQDY GRWLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-29 | 27 | 131 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008351094.1 | 1e-166 | transcription factor WER-like | ||||
TrEMBL | A0A498H8X3 | 1e-155 | A0A498H8X3_MALDO; Uncharacterized protein | ||||
STRING | XP_008351094.1 | 1e-166 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2148 | 32 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40330.1 | 2e-53 | myb domain protein 23 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000931057 |