PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000925348 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 256aa MW: 29146.5 Da PI: 9.7296 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.7 | 1.5e-18 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n+s r+ tf kR++g++KK +ELS+LCd++++ ii+s+ MDP0000925348 11 ISNDSARKATFKKRKKGLMKKVSELSTLCDVKACAIIYSP 50 9**************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.689 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-24 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 8.41E-22 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-24 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.6E-19 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MTRTKVKLTY ISNDSARKAT FKKRKKGLMK KVSELSTLCD VKACAIIYSP YDSQPELWPS 60 PLGVQLVLAQ FKTMPEMEQS KKMVNQESFL RQRITKANEQ LKKQRKENRE KEMTRVMFQS 120 LMGKSQLHGL SMVDLNDLGW LIDQNLKEID NRMKNLNEQD SKSQVQLQPT ALPVAAATVA 180 ECGVERQQGF ELNNNVGTAV QRQQQPFFMD MMNVPQDHQQ QQMVGIGGGY EMNMLPFAAD 240 QSQINAIWSN SSFYP* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 21 | 25 | KKRKK |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00553 | DAP | Transfer from AT5G48670 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008378643.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 2e-63 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A498JAX6 | 0.0 | A0A498JAX6_MALDO; Uncharacterized protein | ||||
STRING | XP_008378643.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-65 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000925348 |
Publications ? help Back to Top | |||
---|---|---|---|
|