PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000919693

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

SBP

Protein Properties

Length: 968aa MW: 106842 Da PI: 6.8388

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000919693	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9.4e-41	148	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ MDP0000919693 148 VCQVEDCKADLSNAKDYHRRHKVCDMHSKATKAVVGNVLQRFCQQCSRFHGLQEFDEGKRSCRRRLAGHNRRRRKTHP 225 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.5E-32	145	210	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.069	146	223	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.27E-37	147	229	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.3E-29	149	222	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	3.51E-8	743	851	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.02E-7	743	849	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.2E-8	744	861	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence Send to blast
MEAFGGRARN FYGTMVPDLK GAGKKSLEWD LNDWKWDGDL FTASPLNAVP SDCRSRQLFP 60 LGLPETPSTA GLSNSSSSGS DGICPGNEKG KRELEKRRRA SFVENEGLTD EVGSLNLKLG 120 GQAYPIMEGE VQHGKKTKIV GTTLNRAVCQ VEDCKADLSN AKDYHRRHKV CDMHSKATKA 180 VVGNVLQRFC QQCSRFHGLQ EFDEGKRSCR RRLAGHNRRR RKTHPDTVVN GGSLNDERGS 240 SYLLISLLRI LSNMHSNSSD QTKDQDLLSH LLKNLANLSG TVDGRNMSAL LTASQGLING 300 GASIQTAQKV PDTVSNGCEP SKPSVSASKM DDYINGEDPS RPIRQCSTVP ASDFRRISSV 360 DADHGGLQVV SGLNATKPFP SRDSVPSTSV APEATMGRMQ LNGIDLNNTY DDSQDYLDNL 420 GNSHAPVNSG TVAHGFPFWM RQDSQKSSPP QTSGTSCSTS SSSSGDAQSR TDRIVFKLFG 480 KDPNDLPFVL RAQILNWLSH SPTDIESYIR PGCIILTVYL RLEKSTWEEL CCNLGSIIKQ 540 LLHAANDPFW TTGWVYTRVQ HSVAFTYNGK YLVQETCYDL MDGADTTFAN DQLQCLRFSC 600 SIPNVTGRGL IEVEDHGLSG CFFPFIVAEQ EVCSEICTLE GAIEVAETAD NIQTEPEKLE 660 AKNQALDFVH ELGWLLHRCH TKFRLGHGDP NLELFSFRRF RLLMEFSMDR DWCAVVKKLL 720 GILLEGTVDT GEHPSIELAL LDMSLLHGAV QRKCRPMVEL LLRFVLDKGW QQVDGDGSNF 780 LFKPDAVGPM GLTPLHVAAS TDGCENILDA LTDDPGKVGI EAWKNARDST GLTPNDYACL 840 RGRYTYVQIV QRKINKKHES GHVVLDIPGV ILDSSSKQKQ LDGHKSSKVS ILETERIDMK 900 AMQAHCKQCE MKLAYGNTRS FVYRPAMLSM VAIAAVCVCV ALLFKSSPEV LYVFQPFRWE 960 LLEYGPS*

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence Send to blast

MEAFGGRARN FYGTMVPDLK GAGKKSLEWD LNDWKWDGDL FTASPLNAVP SDCRSRQLFP  60
LGLPETPSTA GLSNSSSSGS DGICPGNEKG KRELEKRRRA SFVENEGLTD EVGSLNLKLG  120
GQAYPIMEGE VQHGKKTKIV GTTLNRAVCQ VEDCKADLSN AKDYHRRHKV CDMHSKATKA  180
VVGNVLQRFC QQCSRFHGLQ EFDEGKRSCR RRLAGHNRRR RKTHPDTVVN GGSLNDERGS  240
SYLLISLLRI LSNMHSNSSD QTKDQDLLSH LLKNLANLSG TVDGRNMSAL LTASQGLING  300
GASIQTAQKV PDTVSNGCEP SKPSVSASKM DDYINGEDPS RPIRQCSTVP ASDFRRISSV  360
DADHGGLQVV SGLNATKPFP SRDSVPSTSV APEATMGRMQ LNGIDLNNTY DDSQDYLDNL  420
GNSHAPVNSG TVAHGFPFWM RQDSQKSSPP QTSGTSCSTS SSSSGDAQSR TDRIVFKLFG  480
KDPNDLPFVL RAQILNWLSH SPTDIESYIR PGCIILTVYL RLEKSTWEEL CCNLGSIIKQ  540
LLHAANDPFW TTGWVYTRVQ HSVAFTYNGK YLVQETCYDL MDGADTTFAN DQLQCLRFSC  600
SIPNVTGRGL IEVEDHGLSG CFFPFIVAEQ EVCSEICTLE GAIEVAETAD NIQTEPEKLE  660
AKNQALDFVH ELGWLLHRCH TKFRLGHGDP NLELFSFRRF RLLMEFSMDR DWCAVVKKLL  720
GILLEGTVDT GEHPSIELAL LDMSLLHGAV QRKCRPMVEL LLRFVLDKGW QQVDGDGSNF  780
LFKPDAVGPM GLTPLHVAAS TDGCENILDA LTDDPGKVGI EAWKNARDST GLTPNDYACL  840
RGRYTYVQIV QRKINKKHES GHVVLDIPGV ILDSSSKQKQ LDGHKSSKVS ILETERIDMK  900
AMQAHCKQCE MKLAYGNTRS FVYRPAMLSM VAIAAVCVCV ALLFKSSPEV LYVFQPFRWE  960
LLEYGPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-29	148	222	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.2877	0.0	bud\| fruit\| leaf\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008390364.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Refseq	XP_008390365.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Refseq	XP_028947549.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
TrEMBL	A0A498IDA8	0.0	A0A498IDA8_MALDO; Uncharacterized protein
STRING	XP_008390364.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Link Out ? help Back to Top
Phytozome	MDP0000919693