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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000916524 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 212aa MW: 22555.9 Da PI: 4.3922 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00084 | 184 | 207 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ C++sF++ L++H + H MDP0000916524 184 FHCQPCNRSFNSDGALQSHAKAkH 207 67999**************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.58E-5 | 178 | 206 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 184 | 207 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.863 | 184 | 211 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 4.6E-5 | 184 | 204 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 186 | 207 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MGASTSLDTS LWDILFVNVI SCLNDSEEED APPIRAPTXV DKGKAKVNGT EVAKKPSISE 60 QKEASSDDDD ESDDEEFGAQ PLAEGDSSED FDESDDDSDS DDETDDSDED EETPKKADVG 120 KKRPAESTKT PANDKKPKFV TPEKTGSKKG SVHTATPHPS KQTGKKPATS DQSKQQAPKP 180 SGAFHCQPCN RSFNSDGALQ SHAKAKHSAA K* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008386929.2 | 1e-125 | histone deacetylase HDT1 | ||||
TrEMBL | A0A498IHG1 | 7e-90 | A0A498IHG1_MALDO; Uncharacterized protein | ||||
STRING | XP_008386929.1 | 1e-124 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1025 | 30 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 1e-19 | histone deacetylase 2C |
Link Out ? help Back to Top | |
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Phytozome | MDP0000916524 |