PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000911336
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 506aa    MW: 57083.1 Da    PI: 5.1168
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000911336genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.73.5e-1791471128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkrknratk..sgyW 83 
                    + pG+rF P +eel+ +yL +k++g  ++  ++ + ++++y   eP+   +     +  a    ++k++yf ++  +k ++g+r +r+++   g+W
  MDP0000911336   9 MLPGYRFCPLEEELILHYLLPKANGMVVPGIDHvVFDFNLYGDqEPSAVWEnfktrR--AndlrRNKDLYFITELTTKVPRGSRISRTVAkgVGTW 102
                    579***********************9776554499999996549*99964244431..1445456689******************66623577* PP

            NAM  84 katgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    k   k k+++    +++++g +k + +   ++ +g+  +W+m ++ l
  MDP0000911336 103 KGDDKGKKICYPagTHNVIGYRKRFHYE--TKGSGKDDRWIMLQFDL 147
                    *********999777778*****99887..7888999*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-217167IPR003441NAC domain
PROSITE profilePS5100525.6289168IPR003441NAC domain
PfamPF023653.5E-1311146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MEHVYDDRML PGYRFCPLEE ELILHYLLPK ANGMVVPGID HVVFDFNLYG DQEPSAVWEN  60
FKTRRANDLR RNKDLYFITE LTTKVPRGSR ISRTVAKGVG TWKGDDKGKK ICYPAGTHNV  120
IGYRKRFHYE TKGSGKDDRW IMLQFDLHQS LIHNQQEKKY VLCVLRKNEE FDKKRKQLAE  180
EDDEMVGEDV DNKSARSLET QGKRQRLLPC VTELQYLQPR INMISSPPLA TGLAHAREEN  240
QGQELLVTCF NNVPSFADNE PSALQWEEAW CQQQQKLQPC IDNNNIVPAA VTLPDYFDQY  300
VGDTGYTATT QADRHYPYVS ETGFTSTTQA HDHPYVDASG FPVTTQAHDI HQYVDSTGLA  360
ASTQADHLHS YINGMGFSLS TQAHDLQQYV NSTRFAATTQ VDHLHSYVDG AGFDVTTQAH  420
DLHQYVDGTR FAATTQTDHL YPYADDTGFT ATTTQADHLY PPSNNVLGGL GDLISDNFES  480
DSMGGEDLWI SADELLRSTP DHANL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021806109.11e-80NAC domain-containing protein 12-like
TrEMBLA0A498JPC60.0A0A498JPC6_MALDO; Uncharacterized protein
STRINGEMJ093601e-76(Prunus persica)
STRINGEMJ097721e-76(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2051435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.13e-15vascular related NAC-domain protein 7