PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000911051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB_related | ||||||||
Protein Properties | Length: 305aa MW: 33180.9 Da PI: 5.6884 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 7.7e-09 | 3 | 27 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia +++ +Rt++++k++w+++l MDP0000911051 3 RWSAIATHLP-KRTDNEIKNYWNTHL 27 4*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.682 | 1 | 31 | IPR017930 | Myb domain |
CDD | cd00167 | 3.01E-7 | 1 | 27 | No hit | No description |
Pfam | PF00249 | 6.0E-7 | 3 | 27 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-13 | 3 | 38 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-7 | 3 | 35 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MIRWSAIATH LPKRTDNEIK NYWNTHLKKR LAKMGIDPVT HKPKKDNLLS SVDGQSKNAS 60 NLSHMAQWES ARLEAEARLV RESRLRSQSS SLLHQLTTTN PNTYVPVNSS SSGSTSAQLQ 120 LKWPSSKHSH NSVDLESPTS TLTYNSDQIN VNXASSSAMG AAIMQPAMIE FVGSSGSSET 180 KEEGGDNEQD WKSHLSFTPL GLVHDHHQNI SMSMEAAGAW TTNDHQVGNV AGDMEAADQE 240 GFTNLLLNNS DEVQSLSDGD RGVDSDNGGG SGSGRGSDYY EDNKHYWNSI LNLVNSSPSE 300 SPMF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11939 | 0.0 | bud| fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028963652.1 | 0.0 | transcription factor MYB16-like | ||||
TrEMBL | A0A498J4G1 | 0.0 | A0A498J4G1_MALDO; Uncharacterized protein | ||||
STRING | XP_008365407.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF835 | 34 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 5e-45 | myb domain protein 106 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000911051 |