PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000907218
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 482aa    MW: 53843.1 Da    PI: 7.351
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000907218genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12296342455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h e+E++RRd++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  MDP0000907218 296 NHVEAEKQRRDKLNQRFCLLRSVVPNV-----SKMDRSSLLADAVAYINQLK 342
                    799***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.8E-3623216IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.51E-12290342No hitNo description
SuperFamilySSF474592.36E-16290357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.262292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14296352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10296341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEEIISSSSS PSFCQDHTLS TFQQRLQFII QNRPECWVYS IFWQASKDST TDQVALSWAG  60
GHFSNPKDHA ASDSRSNGPI NSYQPKFGYN KKVVVNREVE LGFFHDVEDM LVDNNHGYDV  120
TDSDRFYFYS VSFTQSFSAG HASNNILGRA FCSGGFVWLA GDNELQFYQC ERVKEARMHG  180
IQTLVCIATS CGVIELASLD VITQDWDLVH LSKSLFGSDH NNNKLKLLVP DPLEKIGLIS  240
GGQKEFTRHD GSSSGSPYES FGNFTPATTE NPRSKKRGRS SSSNHAATSR ESQLLNHVEA  300
EKQRRDKLNQ RFCLLRSVVP NVSKMDRSSL LADAVAYINQ LKGKVDELEA KIYAQPTQKT  360
LLASSQSTSS ITDQNHQCST NNNNNNTLKN NNNDNVRGAG VLELDVKIVR SNQAMIRVQC  420
PDQDYPYARL MNALKGLGLQ VYHASISSVK ECMIQDVVAR LPYGFTSEEA LRLGIIKRWY  480
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-26112162192Transcription factor MYC3
4rqw_B8e-26112162192Transcription factor MYC3
4rs9_A8e-26112162192Transcription factor MYC3
4yz6_A8e-26112162192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385225.10.0transcription factor MYC2-like
TrEMBLA0A498IN060.0A0A498IN06_MALDO; Uncharacterized protein
STRINGXP_008385225.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-56bHLH family protein