PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000902699 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 372aa MW: 40886.3 Da PI: 9.8147 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.5 | 6.4e-15 | 179 | 225 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd iN+++ L++l+P+a K +Ka++L ++++Y+++Lq MDP0000902699 179 VHNQSERKRRDLINQKIKALQRLVPNA-----SKTDKASMLDEVIKYLQQLQ 225 6*************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.92E-14 | 174 | 229 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-17 | 174 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.882 | 175 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.81E-18 | 178 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-12 | 179 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-16 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MHGLGALLTA QSNPTWSRSR ACDTLESIVD QATCHKRDPN IIRHDQTPAN TSSVVASSGE 60 TWTDSSVQVP PAQGWIRKRS RSXSGFFENN FSTNSIHEEH ADPSSCASPG ASVRLCRDNH 120 KTTSTLVSFE SPPSLKTKST DEDSASHGGL ENRDDGRETT KGGGSSRSHS TRPRRAAAVH 180 NQSERKRRDL INQKIKALQR LVPNASKTDK ASMLDEVIKY LQQLQAQVQM MHNLRNFMAN 240 GHMNMNMMVP LEMQQLQLQH LHQMSLLAHX GIGMGSRIHP TPVVAAALPX FMPPFMMPLL 300 IPPHPPPQAK AEPTSTNNGS DPLPDPYCAL LAQQSMSMDL FNRMAALYRQ EVTPATAASS 360 SQPRSNHVRR N* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 188 | ERKRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008393195.2 | 0.0 | transcription factor PIF7-like isoform X2 | ||||
TrEMBL | A0A498I2S6 | 0.0 | A0A498I2S6_MALDO; Uncharacterized protein | ||||
STRING | XP_008367556.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008393195.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12999 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 1e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000902699 |