PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000902699
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 372aa    MW: 40886.3 Da    PI: 9.8147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000902699genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.4e-15179225455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ Er+RRd iN+++  L++l+P+a      K +Ka++L ++++Y+++Lq
  MDP0000902699 179 VHNQSERKRRDLINQKIKALQRLVPNA-----SKTDKASMLDEVIKYLQQLQ 225
                    6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.92E-14174229No hitNo description
Gene3DG3DSA:4.10.280.102.3E-17174240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.882175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-18178248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-12179225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MHGLGALLTA QSNPTWSRSR ACDTLESIVD QATCHKRDPN IIRHDQTPAN TSSVVASSGE  60
TWTDSSVQVP PAQGWIRKRS RSXSGFFENN FSTNSIHEEH ADPSSCASPG ASVRLCRDNH  120
KTTSTLVSFE SPPSLKTKST DEDSASHGGL ENRDDGRETT KGGGSSRSHS TRPRRAAAVH  180
NQSERKRRDL INQKIKALQR LVPNASKTDK ASMLDEVIKY LQQLQAQVQM MHNLRNFMAN  240
GHMNMNMMVP LEMQQLQLQH LHQMSLLAHX GIGMGSRIHP TPVVAAALPX FMPPFMMPLL  300
IPPHPPPQAK AEPTSTNNGS DPLPDPYCAL LAQQSMSMDL FNRMAALYRQ EVTPATAASS  360
SQPRSNHVRR N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188ERKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393195.20.0transcription factor PIF7-like isoform X2
TrEMBLA0A498I2S60.0A0A498I2S6_MALDO; Uncharacterized protein
STRINGXP_008367556.10.0(Malus domestica)
STRINGXP_008393195.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-31bHLH family protein