PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000900024
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 497aa    MW: 55281.2 Da    PI: 6.0024
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000900024genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.7e-12321366454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  MDP0000900024 321 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 366
                    799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-4825220IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.015317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-18318380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.92E-14320370No hitNo description
Gene3DG3DSA:4.10.280.101.1E-16321381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-10321366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-16323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MEELIISPSS SSSXVSLPQE NHPSLQQRLQ FILQSQPDWW SYAIFWQTSN DHQVDNGRLF  60
LTWGDGHFQG PKDASPNNHH HNPYGGLSER RKILKGIQSL INDTNNPDNH HQDLILDNMG  120
LNAXVTNVEW FYVTSLARSF SVGESISTNV PGKAFSSGSL VWLTGSHELQ FYNCERAKEA  180
QMHGIQTLVC IPTPTGVLEL GSSDLIRENX NLVQQTESLF GSDVVWGQPD PGTRSPIDXI  240
NRNFSFADIG IIAGVGEEDD KKEVALDITA MKKKCGXACP DLVQLSNLNS LNPEHSDSEF  300
PKRTPKKRGR KPGLGRDTPL NHVEAERQRR EKLNHRFYAL RAVVPNVSRM DKASLLSDAV  360
SYINELKXKV DELESQVQRE SKKVKVETGD NLDNQSTTTS VEQTRPPNSS ASGSTGFETE  420
VKIVGSDAMI RVQSANVNYP SARLMAALRD LEFEIHHASL SCMNELMLQD VVVKVPXNMR  480
SEESIKAALL KILDQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-35182202192Transcription factor MYC3
4rqw_B8e-35182202192Transcription factor MYC3
4rs9_A8e-35182202192Transcription factor MYC3
4yz6_A8e-35182202192Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.144550.0bud| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008370350.20.0transcription factor MYC2
TrEMBLA0A498KIX20.0A0A498KIX2_MALDO; Uncharacterized protein
STRINGXP_008370350.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.18e-70bHLH family protein