PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000884108
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 644aa    MW: 72430.4 Da    PI: 5.8334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000884108genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000164624912054
                    HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  20 feeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++ Lr+++P+      + ++Ka+iL  +++Y+k+L
  MDP0000884108 462 LFVLRSMVPSI-----TEVDKASILDDTIKYLKEL 491
                    6789*****96.....69***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-4912190IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.019442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0047449497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-4450491No hitNo description
Gene3DG3DSA:4.10.280.101.6E-6453505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-6459504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MAQNHERVPE NLRKQFAVAV RSIKWSYAIF WSLSTTQQGV LEWGEGYYNG DIKTRKTVEG  60
VEIKTDKMGL QRNVQLRELY KSLLDGETEA EQQAKAPSAA LSPEDLTDAE WYYLLCMSFV  120
FNPGEGLPGR ALATGQTIWL CNAQHADSKV FSRSLLAKTV VCFPYLGGVI ELGVTELVME  180
DLNLIQHIKA SLLDFSKPDC CEKSCSAPHK ADDDSEQIAA KVDHDVVDTL YLENLYSPSE  240
EIKFHHRGIN DLHGNHEEVN IDSPYGCSNG CDHNHQTEDS MMLEGTNAAS QVQSWHFMDE  300
DFSIQDSMNS SDCISEAFVN QGKAHSSAKC KNANHVNLKE LQNFNDTKLS SLDLESVDEH  360
VHYKRTLSAL LASSTKLIEN PCFCDGDCKS SFMKWKKIVV GGCRPTVHQK ILKKILITVP  420
LMSGVRSPRA IGKENTEKNV FPNLQGDDTR REHDKMRESE NLFVLRSMVP SITEVDKASI  480
LDDTIKYLKE LGARAEEMES CMDTVEVIAR RKFLNRVEKT SINYDKTKMD SVKRSLLNKR  540
KACDIDETDP YLNRLFPGES LPLDVKVCVK EQEVLIEMRC PYREYILLDI MDAINNLYLD  600
AHSVQSSTLD GVLTLNLKSK FRGAAISPVG MIKQALWKIA GKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-132519624195Transcription factor MYC3
4rqw_B1e-132519624195Transcription factor MYC3
4rs9_A1e-132519624195Transcription factor MYC3
4yz6_A1e-132519624195Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.162410.0bud| cell culture| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0056230.0KR005623.1 Pyrus pyrifolia HLH33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028951018.10.0transcription factor EGL1-like
TrEMBLA0A498KNS20.0A0A498KNS2_MALDO; Uncharacterized protein
STRINGXP_009367859.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-150bHLH family protein