PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000876738
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 350aa    MW: 38456.2 Da    PI: 4.5864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000876738genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-092793191055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    ++RR++iN ++  L+ l+P+      +K++ +++Le+A++Y+k Lq
  MDP0000876738 279 KKRREKINARLRILQNLVPNG-----TKVDLSTMLEEAIQYVKFLQ 319
                    9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-13268331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.742269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-12273328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-9275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.29E-10278323No hitNo description
PfamPF000101.5E-6279319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MESAAAIANG RWSSLGAMYS SDEEAEFMSQ LIGNCSVTNE MNEASSSAIP FAICPSYDFS  60
TSNMEGIYQG SQYSSEMANL YLSNGSSTYI MNNDETNDCI GNPNRIVETS YHNSEAFRPW  120
DDNATNLFPT QGEEYGMDHH QELSNVNIEN QPGAAIYEKL LQLNRESDHE MAIREPAMEN  180
EVMVSENSKK RPCSSVDVLK NQRNVKAKKG QKAVSSGDIE DNDXSTKGRS SSSCCSGDDD  240
SINGSHHDLS RGVSTSILSP KGTKASRGSA TDSQSIYAKK RREKINARLR ILQNLVPNGT  300
KVDLSTMLEE AIQYVKFLQL QIKLLSSDDM WMFAPIAYNG MNIGIDLNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278283KKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008384550.20.0transcription factor bHLH84-like
TrEMBLA0A498JNG00.0A0A498JNG0_MALDO; Uncharacterized protein
STRINGXP_008384550.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-48bHLH family protein