PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000866611

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 216aa MW: 23427.7 Da PI: 10.2457

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000866611	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42	1.7e-13	40	92	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++h e+E++RR+++ + + Lr++lP + ++K s a+ +Av+YIk+Lq MDP0000866611 40 KKVMHREIEKKRRQEMANLYGSLRSVLPLEF--IKGKRSLADHMNEAVNYIKQLQ 92 6899***********************65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-14	36	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.27E-11	37	96	No hit	No description
PROSITE profile	PS50888	13.7	39	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-10	40	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-9	41	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.5E-4	45	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MNVGMFNNFN TGGQRRKSSL ALTSDGAKNQ DKSNDNDEKK KVMHREIEKK RRQEMANLYG 60 SLRSVLPLEF IKGKRSLADH MNEAVNYIKQ LQTRIKIFGA KRGELKMGSA SSNLSASTLG 120 HGSSGSSSTA ASTLVAVHPC LAGVEIVVST GRSPEQGFLL SRMLKILLGQ GLNVISCSST 180 QVNRRLVYTI QSEVSDPTCV DFSGLQQILT EACHH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008376746.1	1e-158	transcription factor bHLH120-like isoform X1
Swissprot	Q9FLI0	8e-47	BH120_ARATH; Transcription factor bHLH120
TrEMBL	A0A498KLY1	1e-144	A0A498KLY1_MALDO; Uncharacterized protein
STRING	XP_008376746.1	1e-158	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	3e-48	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000866611

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]