PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000837139
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 569aa    MW: 62129.1 Da    PI: 7.6622
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000837139genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-09385432455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P++    +k   Ka +L + ++Y++sLq
  MDP0000837139 385 SHSLAERVRREKISERMKLLQDLVPNC----NKVTGKALMLDEIINYVQSLQ 432
                    8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.28E-10379436No hitNo description
SuperFamilySSF474594.19E-17379450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-17381449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.751381431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6385432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10387437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MENDFFLNAG IPPPLHFEQA SSMPAWRSSF STAIDIQSST ADRNCSLEQS PDCFYNPNWV  60
NKSTNQNIHF ESALSPMVSS PAASNSNISN ESFMIRELIG KLGNIRGTGE ISPHSESLLG  120
IQNSYMGRNG NASANTSSYS TPLNSPPKLR LPVADHHLKK ENLPSLGNSM ALKSSVAEFS  180
ADPGFAERAA KFSCFGSRSF NGRTPQLGMN NNNSTEQPPF RSHPAAKNGG KLPRVSSSPS  240
LKALGSQTSM QEKMSALLQD RSEFPISREE STISEQNPNG ETNSMDLNSR KRKSVSKGKA  300
KDPPPPISPS PTSTKGTEAD ENSNAKRCKP SENNGNDQNG SVKAEEDAKG STSSDEKQTK  360
TGPKPPEPPK DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQDLVPN CNKVTGKALM  420
LDEIINYVQS LQRQVEFLSM KLSSVNTRLD FNMETLMSKE IFQQNGGLPQ HPIFPSDSSA  480
QAIYGHQRQQ NPVLSNGAVD PLDNTSLYQS LGMQLPPLSG FSSERIPQFA AFGEDDLQTI  540
VQMGFGQNPT RESELHGSNQ VSHMKIEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288293SRKRKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.300911e-125fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008372543.10.0transcription factor bHLH62-like
TrEMBLA0A498JVM50.0A0A498JVM5_MALDO; Uncharacterized protein
STRINGXP_008372543.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-111bHLH family protein