PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000828573

Common Name

DOF2, LOC103420345

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 466aa MW: 50885.6 Da PI: 6.039

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000828573	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.4e-40	124	184	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s MDP0000828573 124 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 184 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-31	114	181	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	126	182	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	128	182	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	130	166	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MLETKDPAIK LFGKKIALPA DIEDLGFARP VEKEVEVESE EEDEEEEDEE TEQDSPSRKS 60 TESIEQDDGS PPKTEDPANL EILPDSNVNP KTPSTDEASA LSKTAQTEKE PSTENSEEKA 120 LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKACQR YWTAGGTMRN VPVGAGRRKN 180 KNSASHYRHF TITEALQAAR IDAPNGAHHP ALKSNGRVLS FGVDVPICDP MASVLNLADK 240 NVSSSTRNGL HKGEEQVFRA PCKSRENGDD SSSASSVNVS KPHLVNVNGF SSQIPCLPGV 300 PWPYPWNAAV PPPAFCPPGF PLSFCAAPYW NCGVPGTWNV PWFGPQPATP NQKSPHSSSN 360 SPTLGKHSRD EDVVRPENLE KEEPSRQKNG CVLVPKTLRI DDPSEAAKSS IWATLGIKND 420 SISGKGLFKA FQPKSDQKKT VPETSPAMRA NPAALSRSLN FHESS*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MLETKDPAIK LFGKKIALPA DIEDLGFARP VEKEVEVESE EEDEEEEDEE TEQDSPSRKS  60
TESIEQDDGS PPKTEDPANL EILPDSNVNP KTPSTDEASA LSKTAQTEKE PSTENSEEKA  120
LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKACQR YWTAGGTMRN VPVGAGRRKN  180
KNSASHYRHF TITEALQAAR IDAPNGAHHP ALKSNGRVLS FGVDVPICDP MASVLNLADK  240
NVSSSTRNGL HKGEEQVFRA PCKSRENGDD SSSASSVNVS KPHLVNVNGF SSQIPCLPGV  300
PWPYPWNAAV PPPAFCPPGF PLSFCAAPYW NCGVPGTWNV PWFGPQPATP NQKSPHSSSN  360
SPTLGKHSRD EDVVRPENLE KEEPSRQKNG CVLVPKTLRI DDPSEAAKSS IWATLGIKND  420
SISGKGLFKA FQPKSDQKKT VPETSPAMRA NPAALSRSLN FHESS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.1014	0.0	fruit\| leaf\| stem

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315761.1	0.0	cyclic dof factor 3-like
TrEMBL	D9ZIX9	0.0	D9ZIX9_MALDO; DOF domain class transcription factor
STRING	XP_008356629.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-111	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	MDP0000828573
Entrez Gene	103420345