PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000803116
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 374aa    MW: 41827.9 Da    PI: 8.438
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000803116genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1308.6e-41212289178
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    +Cq+egC+adls+ k+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+
  MDP0000803116 212 RCQAEGCAADLSHSKHYHRRHKVCEFHSKASTVIANGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQ 289
                    6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.2E-34207274IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.18210287IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-37211291IPR004333Transcription factor, SBP-box
PfamPF031101.6E-30213286IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSRFQTKEFV FFETTSNNRI ISNPYEMLDY EWGNPNNVVM LSPDTDSDSI HGSDPTRHHH  60
HHNHASTFLD HYASSQASAF NNLVPAPPPP PPQPHHQTST FANHFNPTHH QAQQLHSIYD  120
PHAYASASTY APPHHXHQHH SMLGLDPVHG GAANGLMLIP KSEDMCPPVD FASRIGLNLG  180
GRTYFASEDD FMNRLYRRSR PGSEITSTHS PRCQAEGCAA DLSHSKHYHR RHKVCEFHSK  240
ASTVIANGLT QRFCQQCSRF HLLSEFDNGK RSCRKRLADH NRRRRKTQQT IQEHHNSQHQ  300
QQPPLEKARN SSSDNVASSP PESAALSVSS VTVAVSPPRM TLDCFRQRAP YQNAAATTSS  360
GSSAHFFSQV GQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-292132861184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.223620.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3549645e-76JQ354964.1 Betula platyphylla squamosa promoter binding protein-like 8 (SPL8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375792.20.0squamosa promoter-binding-like protein 8
RefseqXP_008375793.20.0squamosa promoter-binding-like protein 8
TrEMBLA0A498JF540.0A0A498JF54_MALDO; Uncharacterized protein
STRINGXP_008375792.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-70squamosa promoter binding protein-like 8