PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000790939
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 472aa    MW: 51937.2 Da    PI: 7.9935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000790939genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.4e-13274322255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    r ++ ++Er+RR +i+++++ Lr+l+Pk      +K++ a+i   A+eYI +Lq
  MDP0000790939 274 RSKNLIAERNRRTKIKDGLFALRSLVPKI-----TKMNTAAIIGDAIEYIEELQ 322
                    6778899*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-198160IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.67E-11270326No hitNo description
SuperFamilySSF474596.02E-16271338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.411272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10274322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16274338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-13278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MGLEAAMERL RPLVEAKQWD YCVVWKLGDD PSRFIELMGC CCGGGCDGGT VKVEEGESDE  60
TRVCRDGFLK HSIRTKACEA LAQLPCSMPL YSGIHTEVVI SMQPRWLCGH PNASASNPSQ  120
SHDSTGTRVL IPMLSGLIEL FSTKNIPENR KMVELFMSSF NVSVKQEVIS PHDYANVSLN  180
ASGPQRVLPS LSFASFIPRP HVLPSVSPST SCPEGSSSGS NPSSHQHPLL SSHSKKPNCG  240
DNLFQQPAGF ASGSGSVEEE HNAKVNRKQS GHYRSKNLIA ERNRRTKIKD GLFALRSLVP  300
KITKMNTAAI IGDAIEYIEE LQKKKKELQD ELRELDEEED LTKTKVDMKV LASDERKEGR  360
ICLTSAEQNK SSSSFVRKSP TVVQVEVNQI GKRDCLIKLF SEQNRGGFAR LMENMDSLGL  420
QVVDANVTTF DGNVLNILKV EANKDIQAKK LRDSLIQLTR GTNQTVHKGI I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008340043.10.0transcription factor bHLH90
TrEMBLA0A498HLE10.0A0A498HLE1_MALDO; Uncharacterized protein
STRINGXP_008340043.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.16e-36bHLH family protein