PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000788655

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 56aa MW: 6439.42 Da PI: 4.2322

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000788655	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	64.2	3.9e-20	6	52	1	48
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwd+p MDP0000788655 6 LPPGFRFHPTDEELVAYYLDRKINGRTIEL-EIIPEVDLYKCEPWDFP 52 79**************************.99***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-20	4	52	IPR003441	NAC domain
PROSITE profile	PS51005	21.577	6	55	IPR003441	NAC domain
Pfam	PF02365	8.8E-10	7	49	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 56 aa Download sequence Send to blast
MAPISLPPGF RFHPTDEELV AYYLDRKING RTIELEIIPE VDLYKCEPWD FPVCT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-16	2	52	11	61	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM465684	4e-41	AM465684.2 Vitis vinifera contig VV78X155772.10, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104136.1	2e-30	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	2e-28	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A397YME5	6e-29	A0A397YME5_BRACM; Uncharacterized protein
TrEMBL	A0A3P6BE60	6e-29	A0A3P6BE60_BRACM; Uncharacterized protein
TrEMBL	M4CGK2	4e-29	M4CGK2_BRARP; Uncharacterized protein
STRING	Bra003335.1-P	7e-30	(Brassica rapa)
STRING	XP_008371963.1	1e-29	(Malus domestica)
STRING	XP_010480185.1	1e-29	(Camelina sativa)
STRING	XP_010480187.1	1e-29	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11433	17	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-32	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	MDP0000788655

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]