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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000788644 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB_related | ||||||||
Protein Properties | Length: 98aa MW: 10825.9 Da PI: 8.9625 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.5 | 1.5e-08 | 13 | 56 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a + + ++ +W+ +a+ + g+t +++k ++ MDP0000788644 13 SWTPKQNKLFEKALAVYDKDtqdRWHNVAKAVD-GKTVEEVKRHY 56 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.226 | 6 | 60 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.6E-7 | 10 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.49E-13 | 12 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-4 | 13 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-6 | 13 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.09E-6 | 14 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MASVSSSRNH SSSWTPKQNK LFEKALAVYD KDTQDRWHNV AKAVDGKTVE EVKRHYEILV 60 HDLMHIESGQ VPIPNYKATG SSSSSNGSNR GLGDEQR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-34 | 4 | 86 | 1 | 83 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.25127 | 2e-94 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008388050.1 | 3e-67 | protein RADIALIS-like 6 | ||||
Swissprot | Q1A173 | 3e-37 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A498HVM2 | 6e-47 | A0A498HVM2_MALDO; Uncharacterized protein | ||||
STRING | XP_008388050.1 | 1e-66 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 7e-36 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000788644 |