PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000788304
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 516aa    MW: 57349.2 Da    PI: 6.0023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000788304genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12322368455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h e+E++RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  MDP0000788304 322 NHVEAEKQRREKLNDRFCVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 368
                    899***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.3E-3924220IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.07E-13316372No hitNo description
SuperFamilySSF474599.81E-17316382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.84318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-10321367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-17321384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-13324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MANTMEEILS SCCPPDFCQE TTFQQRLQFI VQNVPEWWVY SIFWRASKDS SDQVSLSWAG  60
GHFQNTHDHL AXKRSNQXTS SYQPKFGFNN VEGKKVINRE VEALLHDDVM DLDMRLVDHG  120
DVTDSELFYF YTVSLTQSFS ASHGNNSNNI FGRAFGSGGF VWLAGDHEFQ FYECERVKEA  180
RMHGIQTLVC IATPCGVVEL ASLDVIKEDY GLVHLSKSLF GSDGNNNNNS RLSKQQTSRE  240
GNILVPILEN ELFSADQNEL TRQDQGGIKE AAPINVGGSS LESPSNSIGN FTSENTENMT  300
RSKKRGRSSN NGAASRESQL SNHVEAEKQR REKLNDRFCV LRSVVPNVSK MDRSSLLADA  360
VAYINQLKSK VEELEAKVQE QAQKPKAGNN ASNNLDHHSS QSTSSIVDQH HYSNNNANNN  420
NNTISNSNRA AAAAVVEVDV DVKIMGSEAM IRVQSPDQDY PYAKLMSALK CLGLQVYHAS  480
ISSVKELMIQ DVVARLPYGF TSEEALRNGI IKRFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-22152202192Transcription factor MYC3
4rqw_B1e-22152202192Transcription factor MYC3
4rs9_A1e-22152202192Transcription factor MYC3
4yz6_A1e-22152202192Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.269350.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008386326.20.0transcription factor bHLH14-like isoform X2
TrEMBLA0A498IM150.0A0A498IM15_MALDO; Uncharacterized protein
STRINGXP_008350027.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-67bHLH family protein