PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000782908 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 598aa MW: 67356.5 Da PI: 8.6188 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.6 | 1.9e-12 | 408 | 452 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f++L++llP+ +K +Ka++L+ A eY+ sL MDP0000782908 408 HMISERKRREKLNESFHTLKSLLPPG-----TKKDKASVLTTAREYLTSL 452 8899********************97.....8***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.523 | 403 | 452 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.09E-11 | 403 | 457 | No hit | No description |
SuperFamily | SSF47459 | 6.54E-17 | 405 | 473 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-15 | 405 | 470 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-10 | 408 | 452 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.8E-14 | 409 | 458 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 598 aa Download sequence Send to blast |
MTKRHKGRLK CSGEIKRDSH FPPLSMDTAF HLDEGSRANF LRLVMQSFGC FYICLWSYMP 60 PPSNCLFFLD GVYDEENQPS SSSGSLARRL FDEYRLSVFK VFENECVPGF AFRNSISFVE 120 LQEMDLQRLA SDDKQRQFYQ EARIKFPLKL QTAVFMGCKS GEIELGMSNV CQINIKREMM 180 RTWLPEVFPG QLSPHTEVAS RSINGQQQYP LSSSSSSLRS LSTMDSPEYS SLLFNIPTTT 240 TTISHNIPEL FTQLSSNPLQ PINISSLEPL PTKNLITTTS STSTTSPHQQ AIQAISRIRN 300 IQFPTPEIED ATMTRAILAV LSSSPYQPPP QTNPPSSSST TDHHLQTPRA SAFKSYNTSV 360 LAPRTQMSAN LRQQNMHKRS ISFLRSLNLT RLREGIQATR PTSSQLHHMI SERKRREKLN 420 ESFHTLKSLL PPGTKKDKAS VLTTAREYLT SLKAQVAELS KRNQQLEARL LPLASLGANE 480 AAAAAAGSSN ERCSLTVTRV STESSPDQDE QIIDLQVILR SQESCTEDMV IRILEFLKRV 540 ENVSLMSMEA NTWISESNFN INRVILRLRV DQGTEWDEAA FQEAVRRVVA DLVRRID* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 411 | 416 | ERKRRE |
2 | 412 | 417 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017178234.1 | 0.0 | putative transcription factor bHLH041 isoform X1 | ||||
TrEMBL | A0A498HVQ2 | 0.0 | A0A498HVQ2_MALDO; Uncharacterized protein | ||||
STRING | XP_008337776.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4150 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 5e-58 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000782908 |