PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000779358
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 265aa    MW: 29537.2 Da    PI: 5.0463
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000779358genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.4e-10155203455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR +iN+++  L++++P +   ++k +  a +L + ++Y++sLq
  MDP0000779358 155 SHSLAERVRRGKINERLKCLQDIVPGC---SNKTMGMAVMLDEIINYVQSLQ 203
                    8**************************...9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.90E-10149207No hitNo description
SuperFamilySSF474599.16E-17151216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.186151202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-7155203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15155214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-10157208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSEFTEDFQS IKPSFPFLDI DPNMELVNQF ADQFNVPSVM EYPSLNFHTY MPFTTDSYLF  60
SNQEPEFPAG NMVENFPKLE VHQTVXDGSE TKKRIAVGDA SQSSSGISTP PVSETGITRK  120
NSAGRGKRVK SNEKEDEKPK EVVHVRARRG QATDSHSLAE RVRRGKINER LKCLQDIVPG  180
CSNKTMGMAV MLDEIINYVQ SLQNQIEFLS MRLAAASSFY DFNSNTDXTE TMQIAAELER  240
LKREAAGYGG FGASFQSXSS TWSP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393318.20.0transcription factor BEE 3
SwissprotQ8GWK71e-57BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A498I1110.0A0A498I111_MALDO; Uncharacterized protein
STRINGXP_008393318.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.12e-58BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]